Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32387
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    32   0.044
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   6.7  

>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 32.3 bits (70), Expect = 0.044
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = -2

Query: 353 PSSPSVPCRNCKRRSIGLXTNLSPKRRNXRXSEAIWXPPXXXSSSRNKLPLYKXSKFECP 174
           P+SP+VP +     S+   TN+SP+R     S A    P    +S N +P +    F  P
Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSP----NSHNAVP-FTPHAFVPP 192

Query: 173 GNXISP 156
            N  SP
Sbjct: 193 VNNASP 198


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
            Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 217  GISFRYTXTRSLSALATPSARDSIFKHRF*FIFCIPDF 104
            G++F    TRS+     P+ARD +  HR      +P F
Sbjct: 934  GVNFIDVATRSIIDQEVPAARDLMAVHRDYVCVKVPQF 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,584
Number of Sequences: 5004
Number of extensions: 17691
Number of successful extensions: 42
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)