Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32387
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D38540-1|BAA07543.1|  284|Caenorhabditis elegans CeTMI protein.        49   2e-06
D38539-1|BAA07540.1|  284|Caenorhabditis elegans CeTMI protein.        49   2e-06
AL132877-1|CAC70114.1|  284|Caenorhabditis elegans Hypothetical ...    49   2e-06
D38542-1|BAA07545.1|  256|Caenorhabditis elegans CeTMIII protein.      49   2e-06
D38541-1|BAA07544.1|  284|Caenorhabditis elegans CeTMII protein.       49   2e-06
D38539-3|BAA07542.1|  256|Caenorhabditis elegans CeTMIII protein.      49   2e-06
D38539-2|BAA07541.1|  284|Caenorhabditis elegans CeTMII protein.       49   2e-06
AL132877-5|CAD45604.1|  256|Caenorhabditis elegans Hypothetical ...    49   2e-06
AL132877-4|CAC70112.1|  284|Caenorhabditis elegans Hypothetical ...    49   2e-06
AL132877-3|CAC70115.1|  256|Caenorhabditis elegans Hypothetical ...    49   2e-06
AL132877-2|CAC70113.2|  193|Caenorhabditis elegans Hypothetical ...    49   2e-06
AF298180-1|AAG10302.1|  256|Caenorhabditis elegans tropomyosin i...    49   2e-06

>D38540-1|BAA07543.1|  284|Caenorhabditis elegans CeTMI protein.
          Length = 284

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 34/91 (37%), Positives = 41/91 (45%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 185 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 244

Query: 336 SVQKLQXXXXXXXXXXXXXXXKXKXIGGDLD 244
           SVQKLQ               + K I  +LD
Sbjct: 245 SVQKLQKEVDRLEDELVHEKERYKTISEELD 275


>D38539-1|BAA07540.1|  284|Caenorhabditis elegans CeTMI protein.
          Length = 284

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 34/91 (37%), Positives = 41/91 (45%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 185 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 244

Query: 336 SVQKLQXXXXXXXXXXXXXXXKXKXIGGDLD 244
           SVQKLQ               + K I  +LD
Sbjct: 245 SVQKLQKEVDRLEDELVHEKERYKTISEELD 275


>AL132877-1|CAC70114.1|  284|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1a protein.
          Length = 284

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 34/91 (37%), Positives = 41/91 (45%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 185 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 244

Query: 336 SVQKLQXXXXXXXXXXXXXXXKXKXIGGDLD 244
           SVQKLQ               + K I  +LD
Sbjct: 245 SVQKLQKEVDRLEDELVHEKERYKTISEELD 275


>D38542-1|BAA07545.1|  256|Caenorhabditis elegans CeTMIII protein.
          Length = 256

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 35/66 (53%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 157 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 216

Query: 336 SVQKLQ 319
           SVQKLQ
Sbjct: 217 SVQKLQ 222


>D38541-1|BAA07544.1|  284|Caenorhabditis elegans CeTMII protein.
          Length = 284

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 35/66 (53%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 185 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 244

Query: 336 SVQKLQ 319
           SVQKLQ
Sbjct: 245 SVQKLQ 250


>D38539-3|BAA07542.1|  256|Caenorhabditis elegans CeTMIII protein.
          Length = 256

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 35/66 (53%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 157 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 216

Query: 336 SVQKLQ 319
           SVQKLQ
Sbjct: 217 SVQKLQ 222


>D38539-2|BAA07541.1|  284|Caenorhabditis elegans CeTMII protein.
          Length = 284

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 35/66 (53%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 185 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 244

Query: 336 SVQKLQ 319
           SVQKLQ
Sbjct: 245 SVQKLQ 250


>AL132877-5|CAD45604.1|  256|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1e protein.
          Length = 256

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 35/66 (53%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 157 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 216

Query: 336 SVQKLQ 319
           SVQKLQ
Sbjct: 217 SVQKLQ 222


>AL132877-4|CAC70112.1|  284|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1d protein.
          Length = 284

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 35/66 (53%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 185 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 244

Query: 336 SVQKLQ 319
           SVQKLQ
Sbjct: 245 SVQKLQ 250


>AL132877-3|CAC70115.1|  256|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1c protein.
          Length = 256

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 35/66 (53%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 157 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 216

Query: 336 SVQKLQ 319
           SVQKLQ
Sbjct: 217 SVQKLQ 222


>AL132877-2|CAC70113.2|  193|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1b protein.
          Length = 193

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 35/66 (53%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 94  AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 153

Query: 336 SVQKLQ 319
           SVQKLQ
Sbjct: 154 SVQKLQ 159


>AF298180-1|AAG10302.1|  256|Caenorhabditis elegans tropomyosin
           isoform IV protein.
          Length = 256

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 35/66 (53%)
 Frame = -1

Query: 516 SGESKIVELEEELRVVGNXLKXLXXXXXXXXXXXXXXKNQIKXLPXRXKXXXXXXXXXXR 337
           +GE+KIVELEEELRVVGN LK L              + QI+ +  R K          R
Sbjct: 157 AGENKIVELEEELRVVGNNLKSLEVSEEKALQREDSYEEQIRTVSSRLKEAETRAEFAER 216

Query: 336 SVQKLQ 319
           SVQKLQ
Sbjct: 217 SVQKLQ 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,293,591
Number of Sequences: 27780
Number of extensions: 109018
Number of successful extensions: 225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)