Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32386
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    27   2.2  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   5.1  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   5.1  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   6.7  

>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 278 VDAEATVPDSVTSISALCTMADTNI 352
           +DA  T PD++  +S  CT+  T I
Sbjct: 50  IDASFTDPDAIVELSKKCTLLTTEI 74


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 398 MSYTPMSFNGLFXTTLVLIWNL 463
           +SY  MSF G+    L LIWN+
Sbjct: 325 LSYPVMSFYGVRGILLKLIWNI 346


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 181 YHSGGRFLHYEVNKGPIRVECGRRNPIGK 267
           Y  G  + H E  K P+     RRNP GK
Sbjct: 262 YTVGPHYSHAETRKSPVVDGIVRRNPHGK 290


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 417 DMGVYDIFQPDLANFQR 367
           D+ V+  FQP LANF++
Sbjct: 259 DVEVFSCFQPQLANFKK 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,562
Number of Sequences: 5004
Number of extensions: 33228
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)