Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32384
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 29 0.31
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 29 0.55
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 0.72
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 28 0.95
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 27 1.7
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos... 27 1.7
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 1.7
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 1.7
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 3.8
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 3.8
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 5.1
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun... 25 6.7
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.7
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 29.5 bits (63), Expect = 0.31
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 37 ENLDPADDPKNIKRPCPN-FDLNCIREYFSRNSQCQLVRGPVP 162
++++ D+ + K PC + F NC++++ + C L R VP
Sbjct: 112 DDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 28.7 bits (61), Expect = 0.55
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +1
Query: 82 CPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLSYYRVDIPNSNLTVEYHDVKTRGFDT-I 258
CPN + I + RGP + L + + D+ NL D D +
Sbjct: 129 CPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIK-DVNWENLDYLIVDTPPGTSDEHL 187
Query: 259 KIIEFYINSKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIV 387
+++F+ NS + V+ Q + L + + RKA PI+
Sbjct: 188 SLVQFFKNSGIDGAVVVTTPQEVALQDVRKEIDFCRKASIPIL 230
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 28.3 bits (60), Expect = 0.72
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 70 IKRPCPN-FDLNCIREYFSRNSQCQLVRGPVPDP 168
I+ PC + F NCI+ + N C + R PV DP
Sbjct: 410 IQLPCKHYFHENCIKPWLRVNGTCAICRAPV-DP 442
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 27.9 bits (59), Expect = 0.95
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 106 CSSSRSSDRVF*CFLGHRPDPSSLQKQQQKRS 11
C S + +D + C+ P P++LQKQQQ S
Sbjct: 571 CDSEKENDDLE-CYFRTPPKPTTLQKQQQSPS 601
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 424 LEFHSQLPMRHFLQLALWLSYC 359
LEF+S L RHF+ L L +C
Sbjct: 199 LEFNSWLVFRHFVDLILMCDFC 220
>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 211 NYYSVYLLCSNLKVVDLVQVPLLIDIENFLRNIHE----CSSSRSSDRVF*CFLGHRPDP 44
NY YL + V L +PLL + N+ + ++E CS+ ++R+ C P P
Sbjct: 316 NYRQSYLRIDAIAVHKLKSIPLLSTVSNWFKKMYEHRANCSALIETERLS-CLQATIPLP 374
Query: 43 S 41
S
Sbjct: 375 S 375
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.1 bits (57), Expect = 1.7
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Frame = +1
Query: 262 IIEFYIN-----SKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLT 426
+IE Y+N TE + A V ++AS T + + R D L +D
Sbjct: 527 LIELYLNYDCISGNTENIYERAIVTLSRIASQST----SDPPPSFVFRDDQLVIDKPGF- 581
Query: 427 FTAVFPSISDL-QLSNAEVFSYVHEINPKF 513
V+ +++D+ QL+++ + SYVH NP +
Sbjct: 582 ---VYHTLNDIPQLNSSTIGSYVHSHNPPY 608
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 13 IASAVAFGENLDPADDPKNIKRPCPNF 93
I S A+GE L D NI+ P P+F
Sbjct: 23 INSNYAYGEQLQSNDQYNNIQHPAPSF 49
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 43 LDPADDPKNIKRPCPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLSYYRVDIPNSNLTVE 222
LD ++ P + + DLN ++ Y++ S +V P + ++ D PN + V+
Sbjct: 486 LDSSNAPHS--QSAATHDLNDVKSYYNTRSSHSVVPNPTNQKVSITGAAADGPNGSAPVD 543
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 232 HHDILRLNYYSVYLLCSNLKVVDLVQVPLLIDIENFLRNIHECSSSRSSDRVF 74
H D + S+ L L V +Q+P L + N+H SS+S+D +
Sbjct: 136 HPDYPTIEELSLSLFREKLMAVKNIQIPFLNSLLQSFENLH---SSKSTDHAY 185
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.4 bits (53), Expect = 5.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 118 FSRNSQCQLVRGPVPDPLPLS 180
+ R+ C++ GP PD +P S
Sbjct: 188 YGRSESCRVSSGPAPDDMPSS 208
>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 242
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +1
Query: 112 EYFSRNSQCQLVRGPVPDPLPLSYYRVDIPNSNLTV------EYHDVKTRGFDTIKIIEF 273
+Y++ + + G P R+ P +NL V ++H V RG ++
Sbjct: 85 KYYNEDKAMKYGNGKKPIQTQTLSGRLQKPRTNLMVGLIRDGQFHIVPLRGLTQLRPSMK 144
Query: 274 YINSKTEKLVLAA 312
++N T+KL AA
Sbjct: 145 HVNEYTQKLKAAA 157
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 6.7
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = -1
Query: 405 FQCVTSYNWLFGFPIVFEN 349
F V ++ W++G P+ F++
Sbjct: 360 FHSVANFGWIYGMPLFFQS 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,737
Number of Sequences: 5004
Number of extensions: 39336
Number of successful extensions: 136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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