Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32384
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708...    29   2.2  
01_03_0015 + 11669321-11670070                                         28   3.9  
04_01_0060 - 607615-607706,608497-608531,609283-609360,610402-61...    27   6.8  

>03_06_0238 -
           32570222-32570330,32570538-32570599,32570658-32570883,
           32571165-32571532,32571644-32571743,32571817-32571879,
           32573077-32573123,32573222-32573353
          Length = 368

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 55  DDPKNIKRPCPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLS 180
           +DP  +      + L CI E+  R+SQC +   P+    P+S
Sbjct: 40  NDPSTVTSCKHEYHLQCILEWCQRSSQCPMCWQPISMKDPMS 81


>01_03_0015 + 11669321-11670070
          Length = 249

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 22  AVAFGENLDPADDPKNIKRPCPNFDLNCIREYFSRNSQCQLVRGPVPDP 168
           AV   E  +  D  + + R    F + CI  +F  NS C L R  V  P
Sbjct: 148 AVCLAE-FEAGDKARALPRCGHRFHVECIDAWFRENSTCPLCRADVEAP 195


>04_01_0060 -
           607615-607706,608497-608531,609283-609360,610402-610550,
           610639-610730,611202-611280,611774-612150,613016-613226
          Length = 370

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 100 NCIREYFSRNSQCQLVRGPVPDPLPLSYYRVDIPNSNLTV 219
           +C    +S  +QC+    PVP  +P +  +  +P+++ T+
Sbjct: 185 SCGFHNYSSRTQCKQCSAPVPSGIPSTTMKTTVPDTSSTL 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,966,901
Number of Sequences: 37544
Number of extensions: 223116
Number of successful extensions: 553
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)