Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32383
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098505-3|AAL27269.2| 578|Caenorhabditis elegans Hypothetical ... 218 2e-57
AF098505-2|AAC67416.2| 814|Caenorhabditis elegans Hypothetical ... 218 2e-57
Z70750-2|CAA94737.1| 756|Caenorhabditis elegans Hypothetical pr... 99 2e-21
L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen prote... 29 1.5
U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box... 29 2.6
Z80216-2|CAB02279.2| 239|Caenorhabditis elegans Hypothetical pr... 28 3.4
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 27 6.0
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 27 6.0
Z54235-5|CAA90976.2| 202|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AF098505-3|AAL27269.2| 578|Caenorhabditis elegans Hypothetical
protein Y71H10A.1b protein.
Length = 578
Score = 218 bits (533), Expect = 2e-57
Identities = 107/172 (62%), Positives = 130/172 (75%), Gaps = 2/172 (1%)
Frame = +3
Query: 6 TVLGHVQRGGSPSAFDRILGCRMGAEAVMALMEATPETEPCVVSLDGNQAVRLPLMECVR 185
T+LGHVQRGG+PSAFDR+LGCRMGAEAV ALME T E+EPCV+S+DGN VR+PL++CV
Sbjct: 121 TILGHVQRGGAPSAFDRLLGCRMGAEAVFALMEMTEESEPCVISIDGNVMVRVPLLKCVE 180
Query: 186 RTKAVSQAMADKNWDLAVQLRGRSFARNLETYKMLTRLKPPKGAFDESGKPSEG--LTLA 359
RT+ V +AMADK+W AV LRGRSF RNLETYK+LT+++ E SEG +A
Sbjct: 181 RTQMVQKAMADKDWTTAVMLRGRSFQRNLETYKLLTKMRTV-----EKDNLSEGHKFNVA 235
Query: 360 VMHVGAPACGMNAAVRSFVRNCIYRGDTVLGIHDXIEGFINGNIVQMEWSDV 515
V++VGAPA GMNAAVRS+VR +Y TV GI D EG NG+ Q +WSDV
Sbjct: 236 VINVGAPAGGMNAAVRSYVRMALYHQCTVYGIEDSFEGLANGSFKQFKWSDV 287
Score = 40.7 bits (91), Expect = 6e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 9 VLGHVQRGGSPSAFDRILGCRMGAEAVMALM 101
VLGHVQ+GGSP+ FDR +G ++ A A+ L+
Sbjct: 490 VLGHVQQGGSPTPFDRNMGTKLAARALEFLL 520
>AF098505-2|AAC67416.2| 814|Caenorhabditis elegans Hypothetical
protein Y71H10A.1a protein.
Length = 814
Score = 218 bits (533), Expect = 2e-57
Identities = 107/172 (62%), Positives = 130/172 (75%), Gaps = 2/172 (1%)
Frame = +3
Query: 6 TVLGHVQRGGSPSAFDRILGCRMGAEAVMALMEATPETEPCVVSLDGNQAVRLPLMECVR 185
T+LGHVQRGG+PSAFDR+LGCRMGAEAV ALME T E+EPCV+S+DGN VR+PL++CV
Sbjct: 324 TILGHVQRGGAPSAFDRLLGCRMGAEAVFALMEMTEESEPCVISIDGNVMVRVPLLKCVE 383
Query: 186 RTKAVSQAMADKNWDLAVQLRGRSFARNLETYKMLTRLKPPKGAFDESGKPSEG--LTLA 359
RT+ V +AMADK+W AV LRGRSF RNLETYK+LT+++ E SEG +A
Sbjct: 384 RTQMVQKAMADKDWTTAVMLRGRSFQRNLETYKLLTKMRTV-----EKDNLSEGHKFNVA 438
Query: 360 VMHVGAPACGMNAAVRSFVRNCIYRGDTVLGIHDXIEGFINGNIVQMEWSDV 515
V++VGAPA GMNAAVRS+VR +Y TV GI D EG NG+ Q +WSDV
Sbjct: 439 VINVGAPAGGMNAAVRSYVRMALYHQCTVYGIEDSFEGLANGSFKQFKWSDV 490
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 342 EGLTLAVMHVGAPACGMNAAVRSFVRNCIYRGDTVLGIHDXIEGFINGN--IVQMEWSDV 515
+G TLA+ G + GMN+AVRS R IY G V I++ EG I G I + W+ V
Sbjct: 44 KGRTLAIYTSGGDSQGMNSAVRSITRMAIYCGCKVYLIYEGYEGMIEGGDFIKEATWNTV 103
Score = 40.7 bits (91), Expect = 6e-04
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 9 VLGHVQRGGSPSAFDRILGCRMGAEAVMALM 101
VLGHVQ+GGSP+ FDR +G ++ A A+ L+
Sbjct: 693 VLGHVQQGGSPTPFDRNMGTKLAARALEFLL 723
>Z70750-2|CAA94737.1| 756|Caenorhabditis elegans Hypothetical
protein C50F4.2 protein.
Length = 756
Score = 99.1 bits (236), Expect = 2e-21
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 10/178 (5%)
Frame = +3
Query: 12 LGHVQRGGSPSAFDRILGCRMGAEAVMALMEATPETEPCVVS----------LDGNQAVR 161
LGH+QRGG+PS DR++G RMG EAV +++ E E VV+ L G+ R
Sbjct: 289 LGHLQRGGAPSFLDRLIGLRMGYEAVQEVLKGKEEKEGAVVTGQKTIAKVMCLRGHNIQR 348
Query: 162 LPLMECVRRTKAVSQAMADKNWDLAVQLRGRSFARNLETYKMLTRLKPPKGAFDESGKPS 341
L +R+T+ ++ + ++ DLA +LRG F + +TY L + P + PS
Sbjct: 349 NELSRVIRQTETANEEIMQRHSDLACRLRGFGFL-DKQTY--LNFVSIPLS----TTMPS 401
Query: 342 EGLTLAVMHVGAPACGMNAAVRSFVRNCIYRGDTVLGIHDXIEGFINGNIVQMEWSDV 515
T AV+H+G+P GMNAA SF R + G V+GI +G N ++ + W++V
Sbjct: 402 RTKTFAVVHIGSPCAGMNAATYSFTRMANHSGIQVIGIKHGWDGLKNKDVKLLTWANV 459
Score = 44.0 bits (99), Expect = 6e-05
Identities = 23/54 (42%), Positives = 30/54 (55%)
Frame = +3
Query: 354 LAVMHVGAPACGMNAAVRSFVRNCIYRGDTVLGIHDXIEGFINGNIVQMEWSDV 515
+ V+ G + GMNAAVRS VR I +G I + G INGNI +W+ V
Sbjct: 13 VGVLTSGGDSQGMNAAVRSVVRETIRQGHRCYLIREGYNGLINGNIELAKWAHV 66
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 6 TVLGHVQRGGSPSAFDRILGCRMGAEAVMALMEATP--ETEPCVVSLDGNQAVRLPL 170
T LG+ Q GG PS FDR +G RMG A ++ + + CV+ L G+ +P+
Sbjct: 660 TNLGYSQLGGHPSCFDRQMGIRMGVRAFEGIVNPVKMGDRDCCVIGLRGSSLRYVPV 716
>L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen protein
90 protein.
Length = 305
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -1
Query: 300 SNGSTSYMFPNYV-QSYDRGAVQLGPNFYQPLPVRQLSFVERI--PLTANEQLGYRRAKQ 130
SNG +Y P ++ + GAV N Y P P R+ S E + P A++ GYR+AK+
Sbjct: 248 SNGRDAY--PGQPGKAGEPGAVGKDAN-YCPCPARRDSKTESVHEPPAASQNGGYRKAKR 304
Query: 129 H 127
H
Sbjct: 305 H 305
>U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box)
transcriptionfactor protein 2 protein.
Length = 351
Score = 28.7 bits (61), Expect = 2.6
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -3
Query: 406 RTAAFMPQAGAPTCITASV-KPSEGFPDSSNAPFGGFKRVNILYVSKLRAKLRPRSCTAR 230
R +FM Q PT +T SV +PS + +P G ++ + S +L+ T+
Sbjct: 215 RNKSFMAQLATPTSVTPSVARPSSATSQNQRSPPRGVQQ--HMQQSTSVQQLQQFQLTSA 272
Query: 229 SQFLSAIACET-AFVRRTHSING 164
+ S I+ A THSING
Sbjct: 273 ATVNSLISRPAFAIPGTTHSING 295
>Z80216-2|CAB02279.2| 239|Caenorhabditis elegans Hypothetical
protein F10G8.2 protein.
Length = 239
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 145 PSSETTHGSVSGVASIKAITASAPIRHPKILSKAEGD 35
PSS +G+++G S A AP+ H K EGD
Sbjct: 8 PSSVPPNGNLTGTPSAGNAAAVAPMAHEKDRQSKEGD 44
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 220 LSAIACETAFVRRTHSINGKRTAWLPSSETTHGSVSGVASIKAITASAP 74
+SA +RR H++ + T + S+E + S AS+K TASAP
Sbjct: 1 MSATERRQRIMRRIHTLQSEDTGY--SNEGSLSRRSSTASVKDETASAP 47
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 220 LSAIACETAFVRRTHSINGKRTAWLPSSETTHGSVSGVASIKAITASAP 74
+SA +RR H++ + T + S+E + S AS+K TASAP
Sbjct: 1 MSATERRQRIMRRIHTLQSEDTGY--SNEGSLSRRSSTASVKDETASAP 47
>Z54235-5|CAA90976.2| 202|Caenorhabditis elegans Hypothetical
protein C09G9.7 protein.
Length = 202
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = -2
Query: 509 RPFHLDDVPINETFNAVVNAKHGIASVNTIPYKRTYGRIHAAGR 378
+ F D+ I + ++ ++ + + N +P + YGR + +GR
Sbjct: 47 KAFRRPDLHIEKLASSCIDKQKDLKMTNVVPSRNRYGRPYISGR 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,434,729
Number of Sequences: 27780
Number of extensions: 252428
Number of successful extensions: 741
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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