Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32381
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    27   1.7  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   2.2  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   2.9  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   6.7  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    25   8.9  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   8.9  

>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 390 FFLRIQSINLSFVYFSIQI*ELVVYHHH 307
           +FLR++SI+  F  F I I E +VY ++
Sbjct: 77  YFLRLESIDYEFSEFHIIINESIVYPYY 104


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 397 GVSAKVTDLMQSTLLSSCFS*KYGIMQVDLF 489
           GVS +      S +LS CF  KY ++ VD F
Sbjct: 255 GVSLQSFQFRSSQILSLCFRPKYKMLLVDTF 285


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 331 LNLDRKVNE*EINRLNSKKEFDGVSAKVTDLMQSTLLSSCF 453
           L+L+ K+ + E+N+   KK+F G    + D    +L+SS F
Sbjct: 387 LSLELKLMQNELNKGQLKKQFKGDLRNLADWNNLSLVSSKF 427


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -2

Query: 368 LISHSFTFRSKFKNL*FTIIIEVCIM 291
           ++++S T +  FK+L F   + +C++
Sbjct: 53  IVTYSLTIQFNFKSLLFLFFVSICVV 78


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 398 PSNSFFEFNLLISHSFT 348
           PSN+ FEFN+ +S ++T
Sbjct: 438 PSNTAFEFNVTLSINYT 454


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 499 IKTKISQPALFHIFKKN 449
           +  K + PALFH+FK+N
Sbjct: 13  LANKKTFPALFHLFKRN 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,492
Number of Sequences: 5004
Number of extensions: 25083
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)