Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32379
(346 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 103 6e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 57 7e-10
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 57 9e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 50 1e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 41 6e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 37 8e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 34 0.005
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 4.4
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 4.4
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom... 25 4.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 4.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 5.8
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 24 7.6
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 24 7.6
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 24 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 103 bits (248), Expect = 6e-24
Identities = 44/47 (93%), Positives = 45/47 (95%)
Frame = +1
Query: 205 KDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTXYNELRV 345
KDSYVGDEAQSKRGILTLKYPIEHGI+ NWDDMEKIWHHT YNELRV
Sbjct: 50 KDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRV 96
Score = 95.9 bits (228), Expect = 2e-21
Identities = 40/47 (85%), Positives = 46/47 (97%)
Frame = +3
Query: 60 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG 200
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMG
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMG 48
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 57.2 bits (132), Expect = 7e-10
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +1
Query: 205 KDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHH 321
KD +VG EAQ+ RG+L ++ PIE GII NW DME+IW +
Sbjct: 54 KDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSY 92
Score = 55.6 bits (128), Expect = 2e-09
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = +3
Query: 66 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 188
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 56.8 bits (131), Expect = 9e-10
Identities = 21/48 (43%), Positives = 38/48 (79%)
Frame = +1
Query: 202 IKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTXYNELRV 345
IKD VGDEA++ R +L +KYP+E+GII ++++M ++W +T + +L++
Sbjct: 49 IKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKI 96
Score = 46.8 bits (106), Expect = 9e-07
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +3
Query: 72 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 170
A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 49.6 bits (113), Expect = 1e-07
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +1
Query: 124 ATTRPAPSSRPSWVALATRA*WSVWAIK---DSYVGDEAQSKRGI-LTLKYPIEHGIITN 291
A++ PA SS+PS++A S D ++G++A K +L YPI HG I N
Sbjct: 42 ASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIEN 101
Query: 292 WDDMEKIWHHTXYNELR 342
WD ME+ W + + LR
Sbjct: 102 WDHMERFWQQSLFKYLR 118
Score = 40.7 bits (91), Expect = 6e-05
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 78 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 161
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.7 bits (91), Expect = 6e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 63 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 164
D+V+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 23.8 bits (49), Expect = 7.6
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = +1
Query: 250 LTLKYPIEHGIITNWDDMEKIWHHTXYNELR 342
+ +K I +G + NWD +W + +L+
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLK 93
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 37.1 bits (82), Expect = 8e-04
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 9 ESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 173
E + + PT + F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 8 EPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 27.5 bits (58), Expect = 0.62
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 217 VGDEAQSKRGILTL-KYPIEHGIITNWDDMEKIWHHT 324
VG++ + G ++ + P E +I+NWD ME++ +T
Sbjct: 69 VGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYT 105
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 34.3 bits (75), Expect = 0.005
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 63 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 164
+++ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 4.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 78 LVVDNGSGMCKAGFAG 125
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 4.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 123 GDDAPRAVFPSIVGRPRHQGVMVGM 197
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPBC19C2.02 |pmt1||DNA methyltransferase
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 4.4
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 142 PSSRPSWVALATRA*WSVWAIKDSYVGDEAQSKRG 246
P+SR W LA W+I D + E K G
Sbjct: 159 PNSRSRWYGLARLNFKGEWSIDDVFQFSEVAQKEG 193
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 24.6 bits (51), Expect = 4.4
Identities = 6/19 (31%), Positives = 12/19 (63%)
Frame = +1
Query: 265 PIEHGIITNWDDMEKIWHH 321
PI+ G + +W+ ++ W H
Sbjct: 113 PIQRGRVVDWEALKAFWKH 131
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 166 RPTMDGKTARGASSPAKPALHMPEPL 89
RP+ DG+ A G A P++ P P+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPV 975
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 23.8 bits (49), Expect = 7.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 321 VVPDLLHVIPVGDDTVLDGVLQSED 247
VV DL +PV D+ LD + +ED
Sbjct: 192 VVADLPFPLPVSDEEQLDWIRANED 216
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 7.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 137 GRVVAGETGLAHAGAIVDYKRSNIVVA 57
G+V+ G++ A A DYK+ ++A
Sbjct: 4 GKVIEGQSVAEWASAYFDYKKGKKIIA 30
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 7.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 85 STMAPACARPVSPATTRPAPSS 150
S AP+ P +P+T +P PS+
Sbjct: 107 SITAPSKTEPSTPSTEKPEPST 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,901
Number of Sequences: 5004
Number of extensions: 28231
Number of successful extensions: 96
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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