Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32376
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   130   2e-31
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    87   2e-18
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    76   4e-15
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   5.1  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   5.1  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   5.1  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   6.7  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  130 bits (313), Expect = 2e-31
 Identities = 62/93 (66%), Positives = 73/93 (78%)
 Frame = +1

Query: 70  PTPNQDRL*LFITLGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAK 249
           P P  DR+ +  T GTLTNGKKFDSS DRG PF   IG  ++IRGWDEGV KMS+GE+AK
Sbjct: 17  PKPG-DRITMHYT-GTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAK 74

Query: 250 LTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 348
           LT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 75  LTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107



 Score = 33.9 bits (74), Expect = 0.015
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 27  MGVTVETISPGDESTYPKSGQTVVVHYTG 113
           MGV  + IS G+   +PK G  + +HYTG
Sbjct: 1   MGVEKQVISSGNGQDFPKPGDRITMHYTG 29


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 43/80 (53%), Positives = 54/80 (67%)
 Frame = +1

Query: 109 LGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQG 288
           +G L NGK FD +  +GKPF F +G+ EVIRGWD GVA M  G   K+T     AYG Q 
Sbjct: 283 IGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQS 341

Query: 289 HPGVIPPNSTLIFDVELLRL 348
            PG IP NSTL+F+V+L+R+
Sbjct: 342 IPG-IPKNSTLVFEVKLVRV 360



 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 45  TISPGDESTYPKSGQTVVVHYTGN 116
           TI+PGDE  +  SG    +H +GN
Sbjct: 98  TITPGDEVFFSASGD-ATIHLSGN 120


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 75.8 bits (178), Expect = 4e-15
 Identities = 39/78 (50%), Positives = 48/78 (61%)
 Frame = +1

Query: 109 LGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAYGQQG 288
           +G LTNGK FD +   GKPF F +G  EVI+GWD G+  M VG    +      AYG + 
Sbjct: 284 IGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKR 342

Query: 289 HPGVIPPNSTLIFDVELL 342
            PG IP NS L+FDV+LL
Sbjct: 343 LPG-IPANSDLVFDVKLL 359


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 210 IPATDYFRFSDPELEGLATVTR*VKLFTVRECSQCNEQLQSV-LIWGRSTRLLD 52
           +P  D+  FS    E L TVT    ++ V   S+C E  +S   ++   T L+D
Sbjct: 375 LPDVDFEIFSHCSFESLTTVTTNTNIWWVWAESRCTEIPESKRTVFPNCTMLID 428


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 195 YFRFSDPELEGLATVTR*VKLFTVRECSQCNEQLQSVL 82
           + R    EL+  A  T   KL+  REC    ++++  L
Sbjct: 461 HIRLKSQELDAFAQATYREKLYMKRECQNARKKIEQQL 498


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 266 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 135
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 157 GKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSPDYAY 276
           G  F  R  +S + R W   +  MSV   AKL    + AY
Sbjct: 176 GPAFSTR-AESNLYRSWGASIINMSVIPEAKLAREAEIAY 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,730
Number of Sequences: 5004
Number of extensions: 46356
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)