Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32372
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.31 
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   1.7  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   2.2  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        26   3.8  
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    25   5.1  
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    25   5.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   6.7  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    25   8.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   8.9  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    25   8.9  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.9  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 439 GETGMSSGSPVIPCYSHLIF 380
           G+TG S G+ ++PCY +++F
Sbjct: 319 GKTGSSLGNLILPCYPYIVF 338


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = -1

Query: 222 NNGTTILIYYPNHITISLPFQLPLRRFHFQRRSNDSS*PNCTPDSFLIDAKVTDE*FQGL 43
           ++G +++I   N++ +SLP   P+        S  S+    + ++FL+ A+ + +  Q +
Sbjct: 261 SSGVSVVITDENYLPVSLPVYSPVLNSFDDSDSYSSTDSELSEEAFLLPAQASRK-TQKI 319

Query: 42  PL-----PRTDYSVYSHIH 1
                  P   YS Y H H
Sbjct: 320 HYINDNDPSNSYSSYQHSH 338


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 366 SIHCTSFSHSFRWKFER 316
           S HCT + HS+ W + R
Sbjct: 100 SRHCTDYGHSYEWPYFR 116


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 225 QNNGTTILIYYPNHITISLPFQL 157
           +  G   +I  PNH T+ +PFQ+
Sbjct: 124 KKRGKNRIISIPNHSTVDIPFQV 146


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 318 RRSNFGY*RRVQGCTIGRCDVQWPVK 241
           RR N G  R  QG   G    +WPVK
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVK 86


>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 318 RRSNFGY*RRVQGCTIGRCDVQWPVK 241
           RR N G  R  QG   G    +WPVK
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVK 86


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 417 DHQ*SRATRISYFHPTNSIHCTSFSHS 337
           DH  SRAT++SYF+   S+ C +  +S
Sbjct: 182 DHDVSRATKLSYFNEW-SLSCLASLYS 207


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 417 PEDIPVSPGQMGERR 461
           P+D+P  PG+ G RR
Sbjct: 446 PDDVPSKPGRRGRRR 460


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 502 DKAVASKSHPFWLSLRSPICPGE 434
           D  +A+  HPF LSL + +C  E
Sbjct: 252 DFMIATPKHPFVLSLINELCKSE 274


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 416 ITSNPVLLASHISIQPIPSIVLLFRTASGGNLKEDPISDTDVEYRVAQSGDAT 258
           ++S+P    S +    +PS V  F ++S         S+T V Y    +G AT
Sbjct: 289 VSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSAT 341


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = -2

Query: 428 NVLRITSNPVLLASHISIQPIPSIVLLFRTASGGNLKEDPISD-TDVEYRVAQSGDATCN 252
           NVL +   P      +++Q + ++   F T   GN  ED     T V      +G A   
Sbjct: 104 NVLELFHGPTFAFKDVALQFLGNLFEFFLTRKNGNKPEDERDHLTVVGATSGDTGSAAIY 163

Query: 251 GL 246
           GL
Sbjct: 164 GL 165


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 455 LAHLSW*NWNVLRITSNPVL 396
           L H  W N N LRI+SN +L
Sbjct: 304 LYHYLWKNSNALRISSNDLL 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,587
Number of Sequences: 5004
Number of extensions: 53523
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)