Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32372
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr...    32   0.28 
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr...    32   0.28 
Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    28   3.4  
U41531-7|AAA83161.2|  415|Caenorhabditis elegans Feminizing gene...    28   4.6  
U14946-1|AAA67723.1|  415|Caenorhabditis elegans ribonucleoprote...    28   4.6  
Z69716-7|CAE17717.1|  153|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL009170-2|CAE17896.1|  153|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF068712-1|AAC17779.1|  500|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical
           protein R08E3.1b protein.
          Length = 1465

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -2

Query: 371 PIPSIVLLFRTASGGNLKEDPISDTDVEYRVAQSGDATCNGLSSATEGSRTMALLS*ST 195
           PI    L + ++   N+  + +    +E+R + + D TC+  S  T G R+  +L+ +T
Sbjct: 55  PIYCASLAYASSKYNNISSETVGIAHLEHRQSLAKDFTCSNASQETFGQRSFVILAENT 113


>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical
           protein R08E3.1a protein.
          Length = 1512

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -2

Query: 371 PIPSIVLLFRTASGGNLKEDPISDTDVEYRVAQSGDATCNGLSSATEGSRTMALLS*ST 195
           PI    L + ++   N+  + +    +E+R + + D TC+  S  T G R+  +L+ +T
Sbjct: 55  PIYCASLAYASSKYNNISSETVGIAHLEHRQSLAKDFTCSNASQETFGQRSFVILAENT 113


>Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical
           protein C43C3.3 protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 374 QPIPSIVLLFRTASGGNLKEDPISDTDVEYRVAQSGDATCNGLS 243
           +P P + +LFR+   G   +    +  VE+ +A S D+  +G+S
Sbjct: 164 KPKPKVEMLFRSTDSGKTLQAARENEFVEFFIALSPDSAYHGIS 207


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 430 QFHQDRWASEGSARXGGICLQLPYRLRRG 516
           +FH  RWA +GSAR    C+   YR  +G
Sbjct: 800 EFHATRWAFDGSARK---CVPFEYRGMKG 825


>U41531-7|AAA83161.2|  415|Caenorhabditis elegans Feminizing gene on
           x protein 1 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 413 TSNPVLLASHISIQPIPSIVLLFRTASGGNLKEDPISDTDVEYRVAQ 273
           T N ++LA+       PS++     ++ G +K+DP SD D++  + Q
Sbjct: 55  TQNNIMLATSA-----PSLINHMENSTDGKVKDDPNSDYDLQLSIQQ 96


>U14946-1|AAA67723.1|  415|Caenorhabditis elegans ribonucleoprotein
           protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 413 TSNPVLLASHISIQPIPSIVLLFRTASGGNLKEDPISDTDVEYRVAQ 273
           T N ++LA+       PS++     ++ G +K+DP SD D++  + Q
Sbjct: 55  TQNNIMLATSA-----PSLINHMENSTDGKVKDDPNSDYDLQLSIQQ 96


>Z69716-7|CAE17717.1|  153|Caenorhabditis elegans Hypothetical
           protein H19J13.2 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 72  LHLLKKSLVCNLVRRNHWTFFENENGVTVTERGA 173
           L + ++ L C L  R H   +ENE+    TE G+
Sbjct: 8   LKMSRRGLECTLENRLHLRIYENEHHANGTETGS 41


>AL009170-2|CAE17896.1|  153|Caenorhabditis elegans Hypothetical
           protein H19J13.2 protein.
          Length = 153

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 72  LHLLKKSLVCNLVRRNHWTFFENENGVTVTERGA 173
           L + ++ L C L  R H   +ENE+    TE G+
Sbjct: 8   LKMSRRGLECTLENRLHLRIYENEHHANGTETGS 41


>AF068712-1|AAC17779.1|  500|Caenorhabditis elegans Hypothetical
           protein T09H2.1 protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 332 GGNLKEDPISDTDVEYRVAQSGDATCNGLSSATEGSRTMALLS*STI---LITSRY 174
           G NL E+ I + +  YR AQ+G+   N  S  T  S    LL  S I   LI+ R+
Sbjct: 138 GRNLMEEKIME-EYRYRFAQTGNGNNNKSSIETNSSMFFDLLIGSIINQLLISERF 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,659,146
Number of Sequences: 27780
Number of extensions: 307847
Number of successful extensions: 663
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)