Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32366
(315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 0.38
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 1.5
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 25 3.6
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 25 3.6
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 25 3.6
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 24 6.3
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 24 6.3
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 24 6.3
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 24 6.3
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 24 6.3
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 23 8.3
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 0.38
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 185 EIMMYANQQLLARMRLERLSHKMCDVKPMMWNEP 286
+I++YA +QL R+ R ++ + D P++W EP
Sbjct: 391 KILLYARRQLT---RMARWNNLIDDSSPLLWREP 421
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 1.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 240 RRSSLILARSCWLAYIMISPRRSLFMPYASSVIQ 139
R+SSLI +S WL++ +S R Y + +
Sbjct: 310 RKSSLISLKSFWLSFYKVSLRYDALYEYLRQIAE 343
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 3.6
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 54 KERRTPLRQSITTKLSSV 1
KE+RT LRQ++ TKL S+
Sbjct: 117 KEKRTFLRQALETKLISL 134
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 24.6 bits (51), Expect = 3.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 282 SFHIIGLTSHILWLRRSSLILARSCWL 202
SF IG+ S+I W R RS WL
Sbjct: 226 SFATIGVVSNIYWQHRQLGKAGRSRWL 252
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 3.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 206 QQLLARMRLERLSHKMCDV-KPMMWNEPLETGYW 304
Q++LA E+L + K + N PL+T YW
Sbjct: 187 QRILAPKSFEQLEQLEAQIQKKLKSNVPLDTDYW 220
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/50 (18%), Positives = 26/50 (52%)
Frame = +2
Query: 5 DDNLVVIDWRKGVRRSLSQNDVMSYFMEDVDLNTYMYYLHMNYPFWMTDD 154
++ LV+++ + + +D F+++ ++ + L ++Y +W DD
Sbjct: 75 NEKLVLLNRDASLDGTRGLSDATVSFIKENNIELVPFQLTLDYDYWRADD 124
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 23.8 bits (49), Expect = 6.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 60 WDKERRTPLRQSITTKLSS 4
W++ R TPL++S++T S
Sbjct: 1374 WERIRNTPLKRSLSTTFYS 1392
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 23.8 bits (49), Expect = 6.3
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = +2
Query: 11 NLVVIDWRKGVRRSLSQNDVMSYFMEDV 94
N ++DW + V+++ + D++ +ED+
Sbjct: 361 NSFLLDWNENVKKNDTYYDILHAILEDL 388
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 23.8 bits (49), Expect = 6.3
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = +2
Query: 11 NLVVIDWRKGVRRSLSQNDVMSYFMEDV 94
N ++DW + V+++ + D++ +ED+
Sbjct: 361 NSFLLDWNENVKKNDTYYDILHAILEDL 388
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 249 LWLRRSSLILARSCWLAYIMISPRRSLFMPYASSVIQ 139
L L SS R W+ + +I PR++ M A ++Q
Sbjct: 702 LLLDVSSTGKIRGTWIGWAVIRPRKAYTMKEADELLQ 738
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 23.4 bits (48), Expect = 8.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 248 CGSDVPVSF*LGVAGWR 198
CG VP ++ L +AGW+
Sbjct: 158 CGQIVPWNYPLNMAGWK 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,168,889
Number of Sequences: 5004
Number of extensions: 18648
Number of successful extensions: 49
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -