Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32366
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0033 + 9865963-9866090,9868173-9868253,9868358-9868375,986... 27 4.1
02_05_1196 - 34901320-34901342,34901937-34902041,34902314-349024... 26 5.4
01_06_1050 + 34125087-34126001,34126082-34126639 26 5.4
08_01_0678 + 5878291-5878461,5879722-5879984,5881658-5881729,588... 26 7.1
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 26 7.1
11_04_0078 - 13274332-13274504,13274896-13274992,13276248-132762... 25 9.4
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 25 9.4
01_07_0093 + 41045841-41045968,41046068-41046161,41046740-410469... 25 9.4
>10_06_0033 +
9865963-9866090,9868173-9868253,9868358-9868375,
9869257-9869374,9869724-9869795,9870049-9870066,
9870231-9870551,9870652-9870760,9871562-9871736,
9871761-9871828,9873147-9873227,9873541-9873767
Length = 471
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Frame = +2
Query: 32 RKGVRRSLSQNDVMSYFMEDVDLNTYMY---------YLHMNYPFW 142
RKG QN +SY+ +D D N Y +L M PFW
Sbjct: 258 RKGANYVERQNSEISYYADDEDANRKKYTKRGTFRHKFLRMLLPFW 303
>02_05_1196 -
34901320-34901342,34901937-34902041,34902314-34902482,
34902645-34902716,34902788-34902871,34903219-34903317,
34903416-34903515,34903704-34903878,34903985-34904198,
34904727-34904803,34904879-34905048,34905593-34905629,
34905988-34906123,34906658-34906915
Length = 572
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 249 LWLRRSSLILARSCWLAYIMISPRRSLFMPYASSVIQNG 133
+WL + L+ A +CWL +++ P P S +G
Sbjct: 80 VWLDTAKLLSAVNCWLKCMLLDPYNQTDHPECKSRPDSG 118
>01_06_1050 + 34125087-34126001,34126082-34126639
Length = 490
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 286 GLVPHHRLNVTHLVAQTFQSHSS*ELLVGVHHD 188
G + + NV H+V FQ++S E +V V D
Sbjct: 88 GAITGNPANVEHIVKTNFQNYSKGEYVVSVMED 120
>08_01_0678 +
5878291-5878461,5879722-5879984,5881658-5881729,
5881807-5881878,5882092-5882166,5882443-5882517,
5883623-5883667,5883767-5883831,5883919-5884203,
5884234-5884298,5884435-5884636,5884735-5884905,
5885237-5885355,5886699-5886909,5887007-5887238,
5887325-5887475,5887547-5887945
Length = 890
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 155 AYGINKERRGEIMMYANQQLLARMRLERLSHKMCDVKP 268
A+ + +E GE+ ++ QQLL RL R+ + + +P
Sbjct: 6 AHLVRREGFGELAVHLVQQLLELFRLGRMGREALNCQP 43
>03_05_0884 - 28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 119 LHMNYPFWMTDDAYGINKERRGEIMMYANQQLLARMRL 232
L N+P W + D Y +E+R ++++ +Q R+ +
Sbjct: 1344 LDQNHPVWGSVDNYTTVREKRKQLLLMLSQNEADRLEV 1381
>11_04_0078 -
13274332-13274504,13274896-13274992,13276248-13276293,
13276421-13276534,13277356-13277501
Length = 191
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 98 LNTYMYYLHMNYPFWMTDDAYGINKERRGEIMMYANQQLLARMRLERLSHKMCDVK 265
L T + +NYP A+ ++ + G + Y N A +++ +L DVK
Sbjct: 59 LGTQTWVRSLNYPIVDDWRAWHVDGQSAGFTVAYGNNLTFATVKVTQLKPHKVDVK 114
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 77 YFMEDVDLNTYMYYLHMNYPF 139
+FM + L Y YL N+PF
Sbjct: 286 FFMRSIGLREYSRYLCFNFPF 306
>01_07_0093 +
41045841-41045968,41046068-41046161,41046740-41046925,
41047035-41047082,41047158-41047343,41047430-41047516,
41048059-41048145,41048231-41048317
Length = 300
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 17 VVIDWRKGVRRSLSQNDVMSYFMEDVDLNTYMYYLHMNY 133
V +D G+ R + +++V + V +TY+YY +Y
Sbjct: 162 VDMDLLMGIMRGICRSEVKTKLKSAVIQDTYLYYSRKSY 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,957,949
Number of Sequences: 37544
Number of extensions: 129380
Number of successful extensions: 292
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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