Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32366
         (315 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09615-1|CAA70830.1|  399|Homo sapiens mTERF protein.                  27   8.8  
BC130391-1|AAI30392.1|  399|Homo sapiens mitochondrial transcrip...    27   8.8  
BC130389-1|AAI30390.1|  399|Homo sapiens mitochondrial transcrip...    27   8.8  
BC108648-1|AAI08649.1|  399|Homo sapiens mitochondrial transcrip...    27   8.8  
BC000965-1|AAH00965.1|  399|Homo sapiens mitochondrial transcrip...    27   8.8  
AK222730-1|BAD96450.1|  399|Homo sapiens mitochondrial transcrip...    27   8.8  
AC003086-1|AAB83941.1|  399|Homo sapiens mitochondrial transcrip...    27   8.8  

>Y09615-1|CAA70830.1|  399|Homo sapiens mTERF protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 309 LGQXPVSRGSFHIIGLTSHILWLRRSSLILARSCWL 202
           LGQ  +S+G  ++  +    LW  R++ +    CW+
Sbjct: 6   LGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWM 41


>BC130391-1|AAI30392.1|  399|Homo sapiens mitochondrial
           transcription termination factor protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 309 LGQXPVSRGSFHIIGLTSHILWLRRSSLILARSCWL 202
           LGQ  +S+G  ++  +    LW  R++ +    CW+
Sbjct: 6   LGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWM 41


>BC130389-1|AAI30390.1|  399|Homo sapiens mitochondrial
           transcription termination factor protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 309 LGQXPVSRGSFHIIGLTSHILWLRRSSLILARSCWL 202
           LGQ  +S+G  ++  +    LW  R++ +    CW+
Sbjct: 6   LGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWM 41


>BC108648-1|AAI08649.1|  399|Homo sapiens mitochondrial
           transcription termination factor protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 309 LGQXPVSRGSFHIIGLTSHILWLRRSSLILARSCWL 202
           LGQ  +S+G  ++  +    LW  R++ +    CW+
Sbjct: 6   LGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWM 41


>BC000965-1|AAH00965.1|  399|Homo sapiens mitochondrial
           transcription termination factor, precursor protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 309 LGQXPVSRGSFHIIGLTSHILWLRRSSLILARSCWL 202
           LGQ  +S+G  ++  +    LW  R++ +    CW+
Sbjct: 6   LGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWM 41


>AK222730-1|BAD96450.1|  399|Homo sapiens mitochondrial
           transcription termination factor precursor variant
           protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 309 LGQXPVSRGSFHIIGLTSHILWLRRSSLILARSCWL 202
           LGQ  +S+G  ++  +    LW  R++ +    CW+
Sbjct: 6   LGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWM 41


>AC003086-1|AAB83941.1|  399|Homo sapiens mitochondrial
           transcription terminator factor protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 309 LGQXPVSRGSFHIIGLTSHILWLRRSSLILARSCWL 202
           LGQ  +S+G  ++  +    LW  R++ +    CW+
Sbjct: 6   LGQTSISKGLNYLTIMAPGNLWHMRNNFLFGSRCWM 41


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,428,906
Number of Sequences: 237096
Number of extensions: 636556
Number of successful extensions: 1218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)