Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32359
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   156   9e-40
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   156   9e-40
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   1.2  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   1.2  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    27   1.2  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   1.2  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   1.2  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   1.6  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    25   3.7  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   4.9  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   4.9  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    24   6.4  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    24   6.4  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    24   8.5  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    24   8.5  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    24   8.5  

>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  156 bits (379), Expect = 9e-40
 Identities = 68/88 (77%), Positives = 80/88 (90%)
 Frame = +1

Query: 13  FDTGYSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNG 192
           F+ G +GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+V +DIFNG
Sbjct: 9   FEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNG 68

Query: 193 KKYEDICPSTHNMDVPHVKREDYQLTDI 276
           +KYED+ PSTHNMDVP VKR++YQL +I
Sbjct: 69  RKYEDMSPSTHNMDVPVVKRDEYQLVNI 96



 Score = 41.5 bits (93), Expect = 4e-05
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = +2

Query: 269 LISADDGYLTLMADNGDLREDLKIPDGDLGTQ 364
           L++ DDGYL LM  +G  ++D+++P+G+LG +
Sbjct: 93  LVNIDDGYLNLMTTDGTTKDDVRLPEGELGNE 124


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  156 bits (379), Expect = 9e-40
 Identities = 68/88 (77%), Positives = 80/88 (90%)
 Frame = +1

Query: 13  FDTGYSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNG 192
           F+ G +GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+V +DIFNG
Sbjct: 9   FEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDIFNG 68

Query: 193 KKYEDICPSTHNMDVPHVKREDYQLTDI 276
           +KYED+ PSTHNMDVP VKR++YQL +I
Sbjct: 69  RKYEDMSPSTHNMDVPVVKRDEYQLVNI 96



 Score = 41.5 bits (93), Expect = 4e-05
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = +2

Query: 269 LISADDGYLTLMADNGDLREDLKIPDGDLGTQ 364
           L++ DDGYL LM  +G  ++D+++P+G+LG +
Sbjct: 93  LVNIDDGYLNLMTTDGTTKDDVRLPEGELGNE 124


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 49  PMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 201
           P +CS  ++     ++   C  V       G+ H     H++G+D+ NG  Y
Sbjct: 35  PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 142 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 261
           K   A   L+  D F+G ++  IC S  N+ +  V  ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = -2

Query: 349 TIRDFXVLTQVTIVSH----QGQVAIIRRYQSVGSLRASRGVRPCCV 221
           TI D  +++  ++VSH    +G+++I++RY+    L A   +RP  V
Sbjct: 50  TISDASIVSNGSLVSHPSIDKGKLSILKRYKMSHRLTAIDKLRPLTV 96


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 133 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 258
           K G+H  A  +++  +  N   K +D CPST   D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 81  FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 176
           + + E   +Q C N+  +N +A  R SS GWD
Sbjct: 41  YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = +1

Query: 34  ASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDI- 210
           A+ +FP Q     K+    +   P ++      + GKH  +       +I   K+   + 
Sbjct: 441 ANESFPEQMYPFIKHNKDYISNHPDEVPPDGLPQKGKHDTSSQMPSENEIVPAKERAYLS 500

Query: 211 CPSTHNMDVPHVKREDYQLTDIC 279
           CP   +  + H + E + + D+C
Sbjct: 501 CPKVWSKIINHPRFESFDIDDLC 523


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 225 VCGGTDIFILFTIEDINPNQVNFSVAVLSG 136
           +CG T +FI    E+I+P  V     VL G
Sbjct: 219 LCGATALFIACKYEEIHPPTVKDLEIVLEG 248


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
 Frame = -1

Query: 299 GSGSHHPQISVSW*SSR-----FTWGTSMLCVEGQISSYFLPL 186
           G+G H  QI+V W S         W +S LC E    S  L L
Sbjct: 208 GNGMHRNQIAVVWASDECIVESIYWFSSALCSEDPPKSALLNL 250


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 64  ALRKNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGID 180
           AL +  + ++KGRPC+I+         K G   V +  +D
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLD 176


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = -3

Query: 171 NQVNFSVAVLSGFGCGHFNNLAWTTLQHN 85
           ++++FSV  L+  G G +  + W  ++++
Sbjct: 428 DEISFSVRYLASLGLGDYTKVTWFLVKNS 456


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 164 TWLGLISS--MVKSMKISVPPHTTWTY 238
           TW GL +    V+S+ +++P H +W Y
Sbjct: 263 TWFGLQAPEPRVESILMTLPLHASWRY 289


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 221  VEGQISSYFLPLKISIPTK*T 159
            VEG+++ Y+L L++ + T+ T
Sbjct: 1013 VEGEVTDYYLALRLLLTTRLT 1033


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 143 FPVLDVDISTILHGRPFSITKP 78
           F ++D  I  ++H RP S++KP
Sbjct: 212 FFLMDKGIRILIHERPSSLSKP 233


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 213 TDIFILFTIEDINPNQVNFSVAVLSGFGCG 124
           T  FIL TIE+ + N  +FS A  + F  G
Sbjct: 710 TPEFILSTIENASNNATDFSTAFNNYFADG 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,247
Number of Sequences: 5004
Number of extensions: 33948
Number of successful extensions: 96
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)