Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32359
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   154   2e-38
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   148   1e-36
U97002-11|AAY86259.1|  121|Caenorhabditis elegans Hypothetical p...    29   0.77 
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    27   3.1  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    27   3.1  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    27   3.1  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    27   3.1  
Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    27   5.4  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      27   5.4  
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical...    27   5.4  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  154 bits (373), Expect = 2e-38
 Identities = 71/89 (79%), Positives = 75/89 (84%)
 Frame = +1

Query: 10  HFDTGYSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFN 189
           HF TG SGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V IDIF 
Sbjct: 10  HFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFT 69

Query: 190 GKKYEDICPSTHNMDVPHVKREDYQLTDI 276
            KK EDICPSTHNMDVP VKR +Y L  I
Sbjct: 70  SKKLEDICPSTHNMDVPVVKRREYLLMAI 98



 Score = 34.3 bits (75), Expect = 0.027
 Identities = 15/33 (45%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = +2

Query: 269 LISADDGYLTLM-ADNGDLREDLKIPDGDLGTQ 364
           L++ DDGY +LM  ++ + ++DLK+PD +LG Q
Sbjct: 95  LMAIDDGYCSLMDPESCEQKDDLKLPDTELGQQ 127


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  148 bits (359), Expect = 1e-36
 Identities = 68/88 (77%), Positives = 74/88 (84%)
 Frame = +1

Query: 13  FDTGYSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNG 192
           FD+  SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V IDIF  
Sbjct: 45  FDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAIDIFTT 104

Query: 193 KKYEDICPSTHNMDVPHVKREDYQLTDI 276
           KK EDICPSTHNMDVP VKR +Y L  I
Sbjct: 105 KKLEDICPSTHNMDVPVVKRREYILMSI 132



 Score = 35.9 bits (79), Expect = 0.009
 Identities = 15/31 (48%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
 Frame = +2

Query: 269 LISADDGYLTLM-ADNGDLREDLKIPDGDLG 358
           L+S +DG+ +LM  ++ +L++DLK+P+GDLG
Sbjct: 129 LMSIEDGFCSLMDPESCELKDDLKMPEGDLG 159


>U97002-11|AAY86259.1|  121|Caenorhabditis elegans Hypothetical
           protein K09H11.11 protein.
          Length = 121

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 305 PSGSGSHHPQISVSW*SSRFTWGTSMLCVEGQISSYFLPLKISIP 171
           P G    HPQI   +    F+WG  +   E   S Y +P  + +P
Sbjct: 17  PPGQQPPHPQIDPLFVLLHFSWGLQVQSGEPMNSGYEMPNNLKLP 61


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 26  TPGPQPPSPCNVRPCVKTV 82
           TPGP P +PC+  P V T+
Sbjct: 174 TPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear
          receptor NHR-80 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 26 TPGPQPPSPCNVRPCVKTV 82
          TPGP P +PC+  P V T+
Sbjct: 38 TPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 26  TPGPQPPSPCNVRPCVKTV 82
           TPGP P +PC+  P V T+
Sbjct: 192 TPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 26  TPGPQPPSPCNVRPCVKTV 82
           TPGP P +PC+  P V T+
Sbjct: 174 TPGPSPMAPCSAGPDVLTL 192


>Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 131 PKPESTATLKFTWLGLISSMVKSMKISVPPHTTWT 235
           P P+S   +    +G +  M  S+ + VPP+T WT
Sbjct: 587 PPPQSMTPVGGP-MGPMGPMTPSIPVQVPPNTMWT 620


>Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 131 PKPESTATLKFTWLGLISSMVKSMKISVPPHTTWT 235
           P P+S   +    +G +  M  S+ + VPP+T WT
Sbjct: 587 PPPQSMTPVGGP-MGPMGPMTPSIPVQVPPNTMWT 620


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -1

Query: 212  QISSYFLPLKISIPTK*TLAWPCFPVLDVDISTILHGRPFSITKPFLRRAEHCMGKVAEA 33
            Q+   F+ L +++P + +   P  P+L   +   ++G P  +T+  LR  E C+  +   
Sbjct: 829  QMRELFVELCLTVPVRLSSLLPYLPLLMDPLVCAMNGSPNIVTQG-LRTLELCVDNL--Q 885

Query: 32   PEY 24
            PEY
Sbjct: 886  PEY 888


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -1

Query: 212  QISSYFLPLKISIPTK*TLAWPCFPVLDVDISTILHGRPFSITKPFLRRAEHCMGKVAEA 33
            Q+   F+ L +++P + +   P  P+L   +   ++G P  +T+  LR  E C+  +   
Sbjct: 832  QMRELFVELCLTVPVRLSSLLPYLPLLMDPLVCAMNGSPNIVTQG-LRTLELCVDNL--Q 888

Query: 32   PEY 24
            PEY
Sbjct: 889  PEY 891


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -1

Query: 212  QISSYFLPLKISIPTK*TLAWPCFPVLDVDISTILHGRPFSITKPFLRRAEHCMGKVAEA 33
            Q+   F+ L +++P + +   P  P+L   +   ++G P  +T+  LR  E C+  +   
Sbjct: 832  QMRELFVELCLTVPVRLSSLLPYLPLLMDPLVCAMNGSPNIVTQG-LRTLELCVDNL--Q 888

Query: 32   PEY 24
            PEY
Sbjct: 889  PEY 891


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -1

Query: 212  QISSYFLPLKISIPTK*TLAWPCFPVLDVDISTILHGRPFSITKPFLRRAEHCMGKVAEA 33
            Q+   F+ L +++P + +   P  P+L   +   ++G P  +T+  LR  E C+  +   
Sbjct: 832  QMRELFVELCLTVPVRLSSLLPYLPLLMDPLVCAMNGSPNIVTQG-LRTLELCVDNL--Q 888

Query: 32   PEY 24
            PEY
Sbjct: 889  PEY 891


>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
           protein Y57A10A.15 protein.
          Length = 1072

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 184 FNGKKYEDICPSTHNMDVPHV 246
           F  K  E +CP  HN   PHV
Sbjct: 25  FERKTIETVCPRVHNYLFPHV 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,266,659
Number of Sequences: 27780
Number of extensions: 205900
Number of successful extensions: 595
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)