Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32357
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   107   1e-24
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   3.8  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   6.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  107 bits (256), Expect = 1e-24
 Identities = 48/74 (64%), Positives = 59/74 (79%)
 Frame = +3

Query: 180 NFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINQFTQTLDKTTAKGLFK 359
           +F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK
Sbjct: 33  SFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFK 92

Query: 360 ILEKYRPETEAARK 401
           +L KYRPET A +K
Sbjct: 93  LLNKYRPETAAEKK 106


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 267 KAVLXRRLKVPPPINQFTQTLDKTTAKGLFKILE 368
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 339 TAKGLFKILEKYR 377
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,457
Number of Sequences: 5004
Number of extensions: 31368
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)