Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32357
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 102 1e-22
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 102 1e-22
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 82 3e-16
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 31 0.55
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 29 2.2
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 28 3.9
02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133 28 5.1
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 27 6.8
04_01_0244 - 3194141-3195091,3195301-3195312 27 6.8
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 27 6.8
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385... 27 8.9
02_04_0537 - 23734010-23734715,23735326-23735333 27 8.9
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 102 bits (245), Expect = 1e-22
Identities = 45/73 (61%), Positives = 57/73 (78%)
Frame = +3
Query: 183 FAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINQFTQTLDKTTAKGLFKI 362
F IG + P +DL RFV+WPK +RIQRQ+ +L +RLKVPP +NQFT+TLDK A LFK+
Sbjct: 32 FGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKM 91
Query: 363 LEKYRPETEAARK 401
L KYRPE +AA+K
Sbjct: 92 LLKYRPEDKAAKK 104
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 143 KIVNPLFEKRPK 178
K+ NPLFEKRPK
Sbjct: 19 KVTNPLFEKRPK 30
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 388 KQPGKXRLRKAAEAKVANKDEPPPKRPNTIRSGXNTVTKLVEK 516
K K RL K A+A+ K K+P ++ G N VT L+E+
Sbjct: 100 KAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIEQ 141
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 102 bits (245), Expect = 1e-22
Identities = 45/73 (61%), Positives = 57/73 (78%)
Frame = +3
Query: 183 FAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINQFTQTLDKTTAKGLFKI 362
F IG + P +DL RFV+WPK +RIQRQ+ +L +RLKVPP +NQFT+TLDK A LFK+
Sbjct: 16 FGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKM 75
Query: 363 LEKYRPETEAARK 401
L KYRPE +AA+K
Sbjct: 76 LLKYRPEDKAAKK 88
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 143 KIVNPLFEKRPK 178
K+ NPLFEKRPK
Sbjct: 3 KVTNPLFEKRPK 14
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 388 KQPGKXRLRKAAEAKVANKDEPPPKRPNTIRSGXNTVTKLVEK 516
K K RL K A+A+ K K+P ++ G N VT L+E+
Sbjct: 84 KAAKKERLLKRAQAEAEGKTVEA-KKPIVVKYGLNHVTYLIEQ 125
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 81.8 bits (193), Expect = 3e-16
Identities = 37/69 (53%), Positives = 49/69 (71%)
Frame = +3
Query: 183 FAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINQFTQTLDKTTAKGLFKI 362
F IG + P +DL RFVRWPK +RIQRQ+ VL +RLKVPP +NQFT+TLDK ++
Sbjct: 33 FGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERL 92
Query: 363 LEKYRPETE 389
L++ + E E
Sbjct: 93 LKRAQAEAE 101
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -2
Query: 248 ILGPSYKSGQVTSWLNALTNGKVXLASSRREDS 150
++ PS KSG++TS L +TNG +SSR+ S
Sbjct: 89 LVSPSSKSGKLTSKLRQVTNGLKMKSSSRKAPS 121
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 251 PHPAPEGCTSXSSESAPSDQP 313
P PAPE + + E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 174 QXNFAIGQGIQPTRDLSRFVRWPKYIRI-QRQKAVLXRRLKVPPP--INQFTQTLDK-TT 341
Q N +GQ + ++ +V+ Y I Q+ + +L RLK PP + TQ + K
Sbjct: 350 QNNSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKN 409
Query: 342 AKGLFKILEK 371
K +L+K
Sbjct: 410 CKAAKDVLQK 419
>02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133
Length = 474
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 352 FSRFWRNTGLRLKQPGKXRLRKAAEAKVANKDEPPPKRPNTIRS--GXNTV 498
F R WR+ R +P + L K+++ + +D P P+ T+R G N V
Sbjct: 34 FLRDWRHKKERTARPDRLPLPKSSKKGLRIEDSPHPELDRTMREKRGKNPV 84
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 388 KQPGKXRLRKAAEAKVANKDEPPPKRPNTIRS 483
KQP +L A A+ ++ + PPP P T+ S
Sbjct: 111 KQPVPAKLFDAPAAEASSSEPPPPPPPRTLPS 142
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 263 ALDADILGPSYKSGQVTSWLNALTNGKVXLASSRREDSRSXLGSTFL 123
AL + GP+ +G WL+A +G L+SS S S G T+L
Sbjct: 248 ALASAARGPASGNG---GWLSATPSGSRDLSSSSSSGSESGSGETYL 291
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 128 RLSPXKIVNPLFEKRPKXLCHWSGH 202
RL+ +I NPLFEKRP + + + H
Sbjct: 176 RLNSLEINNPLFEKRPHDMNYSAKH 200
>10_08_0452 -
18038182-18038253,18038338-18038415,18038502-18038579,
18039112-18039168,18039276-18039349,18039424-18039495,
18039609-18039670,18039861-18039962,18040378-18040490,
18040809-18040940,18041156-18041243,18041617-18041711,
18041793-18042023,18042567-18042680,18042765-18042866,
18043091-18043207,18043301-18044146
Length = 810
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 397 GKXRLRKAAEAKVANKDEPPPKRPNTIRSGXNT 495
GK AA AK K++P PK+P T+ + +T
Sbjct: 86 GKRSESVAAGAKPEAKEKPSPKKPKTLGAKSDT 118
>02_04_0537 - 23734010-23734715,23735326-23735333
Length = 237
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 367 RNTGLRLKQPGKXRLRKAAEAKVANKDE 450
R+ R + PGK RLR+ + A VA+ DE
Sbjct: 202 RHRRRRWRAPGKSRLRRMSLAHVADDDE 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,050,564
Number of Sequences: 37544
Number of extensions: 246109
Number of successful extensions: 782
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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