Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32357
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   106   8e-24
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   106   8e-24
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   103   6e-23
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    82   2e-16
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   2.0  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z82259-2|CAB05129.1|  474|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z82083-7|CAB04969.2|  274|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  106 bits (255), Expect = 8e-24
 Identities = 46/74 (62%), Positives = 59/74 (79%)
 Frame = +3

Query: 180 NFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINQFTQTLDKTTAKGLFK 359
           NF IGQ IQP +D++RFV+WPKYIR+QRQ A+L +RLKVPP INQF   LD  +A+  FK
Sbjct: 142 NFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFK 201

Query: 360 ILEKYRPETEAARK 401
           +L+KYRPE+  A+K
Sbjct: 202 LLDKYRPESSEAKK 215


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  106 bits (255), Expect = 8e-24
 Identities = 46/74 (62%), Positives = 59/74 (79%)
 Frame = +3

Query: 180 NFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINQFTQTLDKTTAKGLFK 359
           NF IGQ IQP +D++RFV+WPKYIR+QRQ A+L +RLKVPP INQF   LD  +A+  FK
Sbjct: 39  NFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFK 98

Query: 360 ILEKYRPETEAARK 401
           +L+KYRPE+  A+K
Sbjct: 99  LLDKYRPESTEAKK 112



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 23/38 (60%), Positives = 27/38 (71%)
 Frame = +1

Query: 400 KXRLRKAAEAKVANKDEPPPKRPNTIRSGXNTVTKLVE 513
           K RLR  AEA+ A K E   KRPNT+R G NT+T+LVE
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  103 bits (248), Expect = 6e-23
 Identities = 45/74 (60%), Positives = 57/74 (77%)
 Frame = +3

Query: 180 NFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINQFTQTLDKTTAKGLFK 359
           NF IGQ IQP +D++RFV+WPKYIR+QRQ A+L +RLKVPP INQF   LD  +A+  FK
Sbjct: 39  NFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFK 98

Query: 360 ILEKYRPETEAARK 401
           +L+KYRPE+    K
Sbjct: 99  LLDKYRPESTEVTK 112



 Score = 33.9 bits (74), Expect = 0.069
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +1

Query: 460 KRPNTIRSGXNTVTKLVE 513
           KRPNT+R G NT+T+LVE
Sbjct: 112 KRPNTVRHGVNTITRLVE 129


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +3

Query: 180 NFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINQFTQTLD 332
           NF IGQ IQP +D++RFV+WPKYIR+QRQ A+L +RLKVPP INQF   LD
Sbjct: 142 NFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 333  KTTAKGLFKILEKYRPETEAARKXQAE 413
            KT AK L + LEK  P+ +A R+ QAE
Sbjct: 3250 KTKAKELLQALEKAIPQEDAIRREQAE 3276



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 333  KTTAKGLFKILEKYRPETEAARKXQAE 413
            KT AK L + LEK  P+ +A R+ QAE
Sbjct: 4153 KTKAKELLQALEKAIPQEDAIRREQAE 4179



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 333  KTTAKGLFKILEKYRPETEAARKXQAE 413
            KT AK L + LEK  P+ +A R+ QAE
Sbjct: 5107 KTKAKELLQALEKAIPQEDAIRREQAE 5133



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 333  KTTAKGLFKILEKYRPETEAARKXQAE 413
            KT AK L + LEK  P+ +A R+ QAE
Sbjct: 6010 KTKAKELLQALEKAIPQEDAIRREQAE 6036



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 333  KTTAKGLFKILEKYRPETEAARKXQAE 413
            KT AK L + LEK  P+ +A R+ QAE
Sbjct: 6913 KTKAKELLQALEKAIPQEDAIRREQAE 6939



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 333  KTTAKGLFKILEKYRPETEAARKXQAE 413
            KT AK L + LEK  P+ +A R+ QAE
Sbjct: 7816 KTKAKELLQALEKAIPQEDAIRREQAE 7842


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 301 LRSTNLPRHWTRLQLRA 351
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>Z82259-2|CAB05129.1|  474|Caenorhabditis elegans Hypothetical
           protein C28D4.2 protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 379 LRLKQPGKXRLRKAAEAKVANKDEPPPKRPNTIRS 483
           L + +PG  +L     A+V   D P PK P T+++
Sbjct: 197 LEISKPGLSKLIAPIVARVHTLDAPIPKEPQTLQT 231


>Z82083-7|CAB04969.2|  274|Caenorhabditis elegans Hypothetical
           protein ZK1010.3 protein.
          Length = 274

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 376 GLRLKQPGKXRLRKAAEAKVANKDEPPPKRPNTIRSG 486
           GL+LK   K   +   E K  NKD+     P+T+ +G
Sbjct: 13  GLKLKAGKKNLFKVGKEKKKKNKDDKEKIDPDTVENG 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,243,418
Number of Sequences: 27780
Number of extensions: 182732
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)