Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32348
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0545 - 4756266-4757510                                           31   0.45 
02_01_0421 + 3080801-3081120,3081578-3081663,3081987-3082125,308...    29   2.4  
02_04_0244 - 21248449-21249038,21249240-21249438,21249963-212502...    27   7.3  
01_06_1819 + 40110697-40110721,40110818-40110828,40111228-401115...    27   9.7  

>05_01_0545 - 4756266-4757510
          Length = 414

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 419 CKPS**YXRXRRQCX*VYRTSPR*CASFQ-QLYVPAP 312
           C P+  Y R  RQC   Y   P  CA+FQ + +VP+P
Sbjct: 346 CLPNRPYQRTPRQCAAFYAAPPVDCAAFQCKPFVPSP 382


>02_01_0421 +
           3080801-3081120,3081578-3081663,3081987-3082125,
           3082470-3082554
          Length = 209

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 125 HH--PPLLLCWFRVSARIRRWPYEMV*PTRATVADW 24
           HH  PP  L   RV+A +RRW   +  PTRA+   W
Sbjct: 70  HHGCPPPAL---RVAAAVRRWTSTLTWPTRASPPRW 102


>02_04_0244 -
           21248449-21249038,21249240-21249438,21249963-21250212,
           21250552-21250577
          Length = 354

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 3   RLAARLAPVSNCGSCW 50
           R+  RL+P SNC  CW
Sbjct: 214 RVGVRLSPYSNCLDCW 229


>01_06_1819 +
           40110697-40110721,40110818-40110828,40111228-40111572,
           40111707-40111782,40113605-40113771,40113818-40114036
          Length = 280

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 24  PVSNCGSCWLNHLVGPSSNSCRH 92
           P  NC  C +N LV PSS  C H
Sbjct: 221 PTFNCPVC-MNELVEPSSTICGH 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,457,718
Number of Sequences: 37544
Number of extensions: 112478
Number of successful extensions: 304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)