Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32347
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    40   3e-04
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    29   0.48 
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    29   0.48 
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   0.83 
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   2.5  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   4.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   4.5  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   7.8  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 341 LMLSKSRLTSLVVLTSMAGYALXPAP-FXLTTFAFCAVGTGLVS 469
           L L K RLT LVVL++M+ YAL P P     T A+  +GT L S
Sbjct: 88  LELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGTALCS 131


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 378 TTNDVNRDLDSIKQYCPVLLFLSY 307
           +T  +NR+L+ IK+YC V+  L++
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 378 TTNDVNRDLDSIKQYCPVLLFLSY 307
           +T  +NR+L+ IK+YC V+  L++
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 298 FLPYSGVLGDFILYRCSCLSF 236
           F P SG+ G F++Y C+ L F
Sbjct: 155 FAPLSGIYGRFVVYFCTLLMF 175


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 93  DTLYLVPETWDTWEFTRNQFYLKLL 167
           DTL  +P  WD  E++R   Y + L
Sbjct: 619 DTLLTIPNIWDIPEYSRGIIYCRWL 643


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 375 TNDVNRDLDSIKQYCPVLLFLSYD---GVSFHTLVS 277
           T D   DLD+ + Y P+ +  +Y    G+SF ++ S
Sbjct: 390 TKDATFDLDAYQNYSPIFMSTTYALAFGLSFASITS 425


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 185 HLARISTAQNWRSKVPLKTQTTATVKNKVTQDTRVWKETPSYDRKSNT 328
           H+  IS   + +   P  T T+  + NKV+  T+ +  T SY   +NT
Sbjct: 729 HINVISPGPSLQVNAPY-TPTSGELGNKVSNPTKEFVSTSSYAPAANT 775


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 200  STAQNWRSKVPLKTQTTATVK--NKVTQDTRVW 292
            + + +W S +PL+ +T  + K  NK+ Q T  W
Sbjct: 1167 AVSPSWASNIPLRRRTKVSAKAANKIVQ-THEW 1198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,128
Number of Sequences: 5004
Number of extensions: 40150
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)