Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32347
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1019 - 7971606-7972077,7972550-7972752                           28   4.4  
04_04_1031 - 30254665-30255794,30256181-30257036                       27   5.8  
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112...    27   5.8  

>06_01_1019 - 7971606-7972077,7972550-7972752
          Length = 224

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 140 SKPVLFKITNNTLFQHLARISTAQNWRSKVPLKTQTTATVKNKVTQDTRVWKETP--SYD 313
           ++ V  ++ +N   + + R++T    R  + L  Q    V  + T+DT +W+ +P  +Y 
Sbjct: 90  NRTVAQELQDNRWLRQMRRMNTTAQVREFIHLWHQIQQVVLQEGTEDTIMWRWSPNGTYS 149

Query: 314 RKS 322
            KS
Sbjct: 150 AKS 152


>04_04_1031 - 30254665-30255794,30256181-30257036
          Length = 661

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 161 ITNNTLFQHLARISTAQNWRSKVPLKTQTTATV 259
           ITN  LF HL   S   +W  ++ +  +T + +
Sbjct: 429 ITNGALFSHLQNTSVLISWEDRLRIAVETASAL 461


>01_06_1351 -
           36510599-36510712,36510802-36510877,36510954-36511210,
           36511300-36511398,36511477-36511675,36511759-36511972,
           36512127-36512195,36512283-36512607,36512722-36512892,
           36512972-36513136,36513212-36513848,36513915-36513976,
           36514237-36514308,36514912-36514947,36515017-36515145
          Length = 874

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 69  FDYVIFKGDTLYLVPETWDTWEFTRNQFYLKLL-ITHSSSILPEYQQHKTGEVK 227
           F+Y++       L P T D + + R QF + LL +  + +ILPEY   +  ++K
Sbjct: 820 FNYMVNYDGRRLLNPITEDPY-YLRRQFLIHLLTLRDNEAILPEYVVDRLRQIK 872


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,280,354
Number of Sequences: 37544
Number of extensions: 232483
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)