Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32345
(357 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 210 5e-56
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 118 2e-28
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 94 5e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 2e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 2e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 59 2e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 48 4e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.070
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 0.86
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 2.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 2.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 6.1
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.0
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 24 8.0
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 24 8.0
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 24 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 210 bits (513), Expect = 5e-56
Identities = 90/103 (87%), Positives = 98/103 (95%)
Frame = +2
Query: 47 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARSK 226
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA+SK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 227 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNXLRVVPEEHPVL 355
RGILTLKYPIEHGI+ NWDDMEKIWHHTFYN LRV PEEHP L
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCL 104
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 118 bits (285), Expect = 2e-28
Identities = 53/102 (51%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Frame = +2
Query: 53 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARSKRG 232
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA++ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 233 ILTLKYPIEHGIITNWDDMEKIWHHTFYN-XLRVVPEEHPVL 355
+L ++ PIE GII NW DME+IW + + + L +PEEHP+L
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLL 109
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 94.3 bits (224), Expect = 5e-21
Identities = 44/101 (43%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Frame = +2
Query: 59 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEARSKRG 232
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA + R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 233 ILTLKYPIEHGIITNWDDMEKIWHHTFYNXLRVVPEEHPVL 355
+L +KYP+E+GII ++++M ++W +TF+ L++ P +L
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKIL 104
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 68.9 bits (161), Expect = 2e-13
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 24/118 (20%)
Frame = +2
Query: 65 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 193
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 194 ------DSYVGDEARSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNXLRVVPEEH 346
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDH 124
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 59.3 bits (137), Expect = 2e-10
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Frame = +2
Query: 35 FKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 214
F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++
Sbjct: 18 FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGND 72
Query: 215 ARSKRGILTL-KYPIEHGIITNWDDMEKIWHHTFYNXLRVVPEEHPV 352
+ G ++ + P E +I+NWD ME++ +TF L + EHP+
Sbjct: 73 TLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFLK-LGIDRMEHPI 118
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 59.3 bits (137), Expect = 2e-10
Identities = 33/102 (32%), Positives = 53/102 (51%)
Frame = +2
Query: 50 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARSKR 229
D+V+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 230 GILTLKYPIEHGIITNWDDMEKIWHHTFYNXLRVVPEEHPVL 355
G + +K I +G + NWD +W + L+ P EHP+L
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPIL 102
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 48.0 bits (109), Expect = 4e-07
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +2
Query: 50 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARSKR 229
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE +
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 230 GI--LTLKYPIEHGIITNWDDMEKIWHHTFYNXLRVVPEEHPVL 355
I + +K +GII +W+ W L+V P E+ ++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMM 105
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 30.7 bits (66), Expect = 0.070
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 110 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARSKRGILTLKYP 253
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.1 bits (57), Expect = 0.86
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +2
Query: 65 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARSKRGILTL 244
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 245 KYPIEH--GIITNWDDMEKIW 301
++ H G + +W +W
Sbjct: 58 QFRRAHEKGYLVHWSTETAVW 78
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 2.6
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = +2
Query: 251 PIEHGIITNWDDMEKIWHHTF 313
PI+ G + +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = -3
Query: 250 VLQSEDTSLAPGLVTHVGVFLAHTDHHALVARAT 149
+ S+DT +APG++ H + L ++H+++V +T
Sbjct: 1186 IYASKDTEIAPGILGH--LVLELSNHNSVVRSST 1217
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 6.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 153 RPTMDGKTARGASSPAKPALHMPEPL 76
RP+ DG+ A G A P++ P P+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPV 975
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 23.8 bits (49), Expect = 8.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 77 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEARSKR 229
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 307 VVPDLLHVIPVGDDXVLDGVLQSED 233
VV DL +PV D+ LD + +ED
Sbjct: 192 VVADLPFPLPVSDEEQLDWIRANED 216
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 8.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 124 GRVVAGETGLAHAGAIVDYKRSNIVVA 44
G+V+ G++ A A DYK+ ++A
Sbjct: 4 GKVIEGQSVAEWASAYFDYKKGKKIIA 30
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 8.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 72 STMAPACARPVSPATTRPAPSS 137
S AP+ P +P+T +P PS+
Sbjct: 107 SITAPSKTEPSTPSTEKPEPST 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,297
Number of Sequences: 5004
Number of extensions: 29002
Number of successful extensions: 99
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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