Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32344
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   6.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.9  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 409 KTFQMNEYFWTRCWGLFG*LK 347
           + F+ +EY W  CW  +G L+
Sbjct: 56  RPFRQDEYSWNDCWMRWGQLR 76


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -2

Query: 314 PPSLAT*VTA*VTPSGPMYANSPRTSRASFSVPMFFS*PVS*ALIPLEVS*PVLYPSTPM 135
           PP  +T  T   T S P+ + S   +  S S+P     P   +  P+  + P    STP+
Sbjct: 371 PPPASTSSTG--TSSSPLLSTSTSCT-TSTSIP-----PTGNSTTPVTPTVPPTSSSTPL 422

Query: 134 LSLSCTDDDSV 102
            + +CT   SV
Sbjct: 423 TTTNCTTSTSV 433


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 149 PSTPMLSL---SCTDDDSVGIRADWGSDSYGDEESD 51
           PST M +L   +    D +  +AD   D YGD +SD
Sbjct: 81  PSTKMKALYDYTQQSVDEISFQADQTLDCYGDTDSD 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,174
Number of Sequences: 5004
Number of extensions: 32449
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)