Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32338
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.31 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   3.8  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   5.1  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   6.7  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
 Frame = -3

Query: 484 FAAVGLRIESQSVGTYKIVAYTVHAVSESAAIAGVA*FEVSELMGTQFCRLRW---L*RG 314
           FA+ GL+    ++ T KI  YT+  +    AIA       S ++  +  ++ W   L  G
Sbjct: 323 FASSGLKTNISTLNTGKIWGYTIGTI--CVAIASKM---GSSMLAARILKMPWSDSLVVG 377

Query: 313 SFETRHFVRVLARIYIEIHVGIVTETIGA*FLFSGSIDAF 194
           S  +   +  L  + I +  GI+ ETI + F+F   I  F
Sbjct: 378 SLMSCKGLVELIVLNIGLSTGILNETIFSMFVFMAVITTF 417


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 87  ASKISTREQAPVRPTGTMQGN*TKGIQCPEAATDILNASMEPLKRNYAPMVSVTIPT*IS 266
           A + ST+E++   P+   Q    K  + PEAA +   ++  P   +     S T PT  S
Sbjct: 24  AVESSTKEESSNTPSTETQPE--KKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSAS 81

Query: 267 MYI 275
           +Y+
Sbjct: 82  LYV 84


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +3

Query: 33   FAPLFTHKHSISLLDRQI--ASKISTREQAPVRPTGTMQGN*TKGIQCPEAATDILNASM 206
            FA  F HK++ SLLD ++   + IS + +  +   G   GN   G      A  + N  +
Sbjct: 1870 FAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRHGAKSVRNLEL 1929

Query: 207  EPL 215
             P+
Sbjct: 1930 LPI 1932


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +2

Query: 14  FVILTCFCAFVYTQTQYQPFGQTNRFQNQYQGTSTSQAYWDNAGELNERXPVSGSCDRYI 193
           +V+L C C +++        GQ N F+NQ  GT   +  +     L  + P       +I
Sbjct: 316 YVLLLC-CYYIFDTCN----GQKNHFRNQIYGTEVHRKTFPQLPWLIIKNPT------FI 364

Query: 194 ECING 208
            C NG
Sbjct: 365 RCANG 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,276
Number of Sequences: 5004
Number of extensions: 46244
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)