Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32338
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 31 0.42
06_01_1193 + 10264360-10264504,10264763-10264910,10268350-102687... 29 2.2
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548... 29 2.2
01_01_0796 + 6190931-6192745 29 2.9
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 28 5.1
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 28 5.1
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 27 8.9
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 31.5 bits (68), Expect = 0.42
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -3
Query: 469 LRIESQSVGTYKIVAYTVHAVSESAAIAGVA*FEVSELMGTQFCRLRWL*RGSFETR 299
L+ + Q+ G + AY HA+S+ I G+ F M FCR + GS + R
Sbjct: 545 LQYQQQTDGFEESYAYLEHAISQMGNIDGILGFSQGAAMAALFCRQQQKTCGSLKFR 601
>06_01_1193 +
10264360-10264504,10264763-10264910,10268350-10268748,
10268925-10271214
Length = 993
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 222 NYAPMVSVTIPT*ISMYIRASTLTKCRVSNDPRYSHRNRQNCVPINSDTSN*ATPAIAAD 401
N + T+PT IS TL RVSN+ +S + C+ N TP++++D
Sbjct: 635 NMSSTYIATLPTEISKLQCLRTLRCTRVSNNNNFSINHPVKCLTNTMCLPNIFTPSVSSD 694
Query: 402 S 404
+
Sbjct: 695 N 695
>02_01_0735 +
5484398-5484400,5484670-5484773,5485012-5485138,
5485212-5485306,5485597-5485720,5486523-5486603,
5487177-5487275,5487416-5487583,5487688-5487775,
5487860-5487930,5488000-5488068,5488368-5488499,
5488740-5488946
Length = 455
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 275 PCQYPNEVPCLERSSLQPPQPTELCPHQFGYFKLGDARNCSGFRNCVNGV 424
P Y + V ++L PPQ C + G FK+G N S ++G+
Sbjct: 228 PQSYYDSVSMFFYNTLHPPQLPVKCSNNLGAFKVGTVTNESFIFEIISGL 277
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +2
Query: 215 EEKLCPDGLRYNPNVNFDVYPCQYPNEVPCLERSSLQPPQPTELCPHQFGYFKLGDARNC 394
E L P YN ++ P +Y N E L QP G+ +G+ N
Sbjct: 481 EAHLPPAAQEYNQDLAVQQQPQEYENYDYMFENVGLSQAQPVAAGAGDAGFAAIGNDDNP 540
Query: 395 SGFRNCVNGVGYD 433
G++ V YD
Sbjct: 541 FGYQQLVASPLYD 553
>09_04_0435 -
17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 27.9 bits (59), Expect = 5.1
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 422 VGYDFVCPDXLAFNSETYRCE 484
+ Y+F+C L F+S+T++C+
Sbjct: 120 ISYNFLCMRILLFDSDTFKCQ 140
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 212 AEEKLCPDGLRYNPNVNFDVYPCQYPNEV 298
AE +L DGL Y+PN +D+ C + + V
Sbjct: 42 AESELVCDGLFYHPNEIWDLKSCPFDHRV 70
>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 82 KSLPKSVPGNKHQSGLLGQCRGTERKXSSV 171
K L S+P N Q G++GQ T ++ +SV
Sbjct: 1312 KGLLGSLPDNAFQKGIMGQSWNTNQRFASV 1341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,554,524
Number of Sequences: 37544
Number of extensions: 319831
Number of successful extensions: 855
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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