Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32337
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    91   5e-20
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    55   4e-09
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   3.4  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   5.9  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   7.8  

>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 91.5 bits (217), Expect = 5e-20
 Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
 Frame = +3

Query: 114 MXKLVNERLA-SEXAD--VKVSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFXNVYVSV 284
           M K++  R A +  AD   K+SVND +IKA  AA ++VP VN+ WM  FIRQ+ NV +S+
Sbjct: 289 MEKIIRLRAALNAMADGRYKLSVNDLVIKATTAALRQVPEVNAAWMGDFIRQYKNVDISM 348

Query: 285 AXATPTGLITPILHNADSRGIIDLSXNMKQLAQKAKDGKL 404
           A ATP+GLITP++ N  + G+ ++S   K   Q+A++ KL
Sbjct: 349 AVATPSGLITPVIRNTHALGLAEISTLAKDYGQRARNNKL 388



 Score = 40.7 bits (91), Expect = 8e-05
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +2

Query: 2   LPLSGMRETIAKRLTAAKQSIPHYQLSVTVNVE 100
           LPLS MR+ IA RL  +K   PHY ++V+VN+E
Sbjct: 258 LPLSNMRKIIASRLAESKNMNPHYYVTVSVNME 290


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 55.2 bits (127), Expect = 4e-09
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
 Frame = +3

Query: 108 LAMXKLVNERLASEXADVKVSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFXNVY---- 275
           +A+ K   + +  E   VK+    F  KA   A K++P +N   +E   +    VY    
Sbjct: 258 VALRKKYKDEILKETG-VKIGFMSFFSKACTQAMKQIPAINGS-IEGEGKGDTLVYRDFC 315

Query: 276 -VSVAXATPTGLITPILHNADSRGIIDLSXNMKQLAQKAKDGKL 404
            +S+A ATP GL+TP++ NA+S  ++++   +  L  KA+ GKL
Sbjct: 316 DLSIAVATPKGLVTPVIRNAESMSLLEIESAIATLGSKARAGKL 359


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 283 TLTYTLXNCLMKDSIQCELTVG 218
           T+T+ L N  +K S++ ELT+G
Sbjct: 79  TITFPLLNSSVKQSLKKELTIG 100


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 184 SLKPWRLPASACLQSTHIGWSLS 252
           SLK WRL +  CL + H  W+ S
Sbjct: 683 SLKKWRLTSRFCLGNLH-DWNTS 704


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 306 LITPILHNADSRGIID 353
           L  PI+HN DS+ I+D
Sbjct: 125 LEVPIIHNGDSKTILD 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,799
Number of Sequences: 5004
Number of extensions: 19022
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)