Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32336
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    47   2e-06
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      31   0.13 
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    31   0.13 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    31   0.13 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   1.6  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    27   2.1  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    26   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   3.6  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.6  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   4.7  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.7  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   6.3  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = +1

Query: 286 VPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNERTXTVR 459
           VP +++FQT+DLFERRN  QV   +++  R   K        LGPK+A+K  R  + +
Sbjct: 77  VPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPRVFSAQ 134


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 286 VPEEEIFQTADLFERRNIPQVTLCLYAL 369
           +PE   F+  D++E +N+P+V  C++AL
Sbjct: 116 LPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 48  RKQGTKEQXGCSLGISXVLGXAATKWRIRGMC 143
           RK GT E  GC LG+   L     ++ +R  C
Sbjct: 526 RKYGTTEHGGCGLGLERFLAWLCDRYTVRECC 557


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +1

Query: 304 FQTADLFERRNIPQVTLCLYAL 369
           F+T DL  R NIP+V  CL+AL
Sbjct: 145 FETKDLVRRFNIPKVIYCLHAL 166


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 114  RLLPKXQRXQVSNLLVPWSLVSWQAL 37
            RL     R QV+  LVPW   +W+AL
Sbjct: 1350 RLQNSIDRAQVAIHLVPWDSANWKAL 1375


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 202 KKSKREEPTCQLMGEHSKVPSGNQGNTXVPEEE 300
           KK KR  PT ++    SKV S N       EEE
Sbjct: 79  KKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEE 111


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 153 GVILCKLANKLAPGSVKKIQERGTNLPAHGRTFKGSKRQSRKYGSTRRRNI 305
           G  LC +  +++   VK   +  T+ P    +F G+    RKY S   RN+
Sbjct: 108 GAWLCTIVKRVSKLYVKLSLQLDTSTPTLEDSFDGNGFIQRKYVSDASRNV 158


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = -1

Query: 401  VNSGCF*VILPRAYKHNVTWGMLRLSKRSAVWNISSSGTXVFP*LPLGTFECSPMSWQVG 222
            +NS C  ++L  AYK NV+   L    R  + N +++   +   L  G ++   +     
Sbjct: 1646 MNSSCADILLLAAYKWNVSRPSLLNDNRDVLDNTTTNKYWIDVQLRFGDYDSHDIERYTR 1705

Query: 221  SSLLDF 204
            +  LD+
Sbjct: 1706 AKFLDY 1711


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 158 DPLQIGQQISSWVSEKNPRERNQLAS 235
           D LQ+ ++  SW++EK   E  +L S
Sbjct: 11  DSLQVDEKAKSWIAEKVEEELRRLES 36


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 356 HNVTWGMLRLSKRSAVWN 303
           HN  WG  R  + +A+WN
Sbjct: 491 HNFVWGRFRELEHAAMWN 508


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 122 MAHTRXVLRXRCDPLQIGQQISSWVSEKN-PRERNQLASSWENIQRFQAAIKEIRXYQKK 298
           M+  R +LR +    ++GQ+     S +   R++ +   S+EN+ R Q+    +  + +K
Sbjct: 1   MSSARELLR-KVKQERLGQKRGLKASSQELKRQKTRDHKSFENLGRDQSRELAVSDFNEK 59

Query: 299 KYSKPPIFLRGVT 337
           + ++PP   R V+
Sbjct: 60  QSTEPPKDTRAVS 72


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 259 PSGNQGNTXVPEEEIFQTADLFERRNI 339
           PS +QG++ V E  I Q  + F+ RN+
Sbjct: 30  PSQHQGSSSVKENAISQPNESFQSRNM 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,619
Number of Sequences: 5004
Number of extensions: 42861
Number of successful extensions: 99
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)