Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32336
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 30 0.89
03_05_1125 + 30576951-30577010,30577163-30577285,30577393-305775... 30 0.89
01_01_0997 + 7884974-7885043,7885689-7885975,7886056-7886311,788... 30 0.89
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566... 30 1.2
06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615... 29 2.1
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 29 2.7
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 28 4.7
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 4.7
03_02_0972 - 12816807-12817016,12817099-12817215,12817963-128181... 28 4.7
07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647... 27 6.3
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 153 GVILCKLANKLAPGSVKKIQE 215
G++LC NK+ PGSV K+ E
Sbjct: 91 GIVLCNALNKVQPGSVPKVVE 111
>03_05_1125 +
30576951-30577010,30577163-30577285,30577393-30577552,
30577635-30577702,30577928-30578473,30578725-30579312,
30579392-30579604,30580227-30580388
Length = 639
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 205 KSKREEPTCQLMGEHSKVPSGNQGNT 282
K++ + PT LMG H+++PS G T
Sbjct: 308 KNQSQRPTANLMGMHAQIPSSGMGLT 333
>01_01_0997 +
7884974-7885043,7885689-7885975,7886056-7886311,
7886455-7886537,7886634-7886687,7887941-7888012,
7889093-7889155,7889274-7889324,7889432-7889513,
7889606-7889701,7889774-7889944,7890024-7890130,
7890229-7890326,7890798-7891048,7891235-7891398,
7891689-7891979,7892067-7892377,7892477-7892655,
7893231-7893301
Length = 918
Score = 30.3 bits (65), Expect = 0.89
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 153 GVILCKLANKLAPGSVKKI 209
G++LCK NK+ PG+V K+
Sbjct: 59 GIVLCKAINKIQPGAVPKV 77
>04_04_0319 +
24355275-24355401,24355504-24355603,24356271-24356618,
24356705-24356745,24356821-24356867,24358043-24358107,
24358186-24358308,24358397-24358534,24358658-24358899,
24358988-24359118,24359363-24359388,24359746-24359882,
24359964-24360376,24360514-24360550,24360643-24360667,
24360755-24360887,24361241-24361340,24362015-24362115,
24362998-24363084
Length = 806
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 168 KLANKLAPGSVKKIQERGTNLPAHGRTFKGSKRQSRKYGSTRRR 299
KL N+L+P + + + E GT LP + + + K+ TR+R
Sbjct: 392 KLINELSPSTPEPMTEGGTGLPCSPKFMVTTPAKKEKHRVTRKR 435
>06_02_0369 -
15260013-15260273,15260367-15260516,15261518-15261577,
15262114-15262241,15262559-15262654,15262655-15263039
Length = 359
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 130 MRHLVAAXPKTXEXPSEQPXCSLVPCFLAGIVCRRKSWF 14
+R L+A PK + PS Q C CF+ RRKS F
Sbjct: 309 LRKLLAFDPK--DRPSAQEACHTNDCFIGPTYLRRKSIF 345
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = +3
Query: 201 KKIQERGTNLPAHGRTFKGSKRQSRK----YGSTRRRNIPNRR 317
K+ + RG N P HG +G+ R++R +TRRR P +
Sbjct: 134 KEDENRGENAPVHGEGRRGASRRARAEPVVAPTTRRRAAPTSK 176
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = +1
Query: 22 ICACTQCLPGNK--GPRNKXVAHLXS 93
IC CT+C P +K GPRN V S
Sbjct: 220 ICNCTRCNPSDKSDGPRNPFVRRCNS 245
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 168 KLANKLAPGSVKKIQERGTNLPAHGRTFKGSKRQSRKYGSTRRR 299
++ ++ SV+K +ER T +PA T K ++Q + R+R
Sbjct: 77 EVLGRICNSSVEKAEERETVIPAISNTEKMGEKQQKSIPRDRKR 120
>03_02_0972 -
12816807-12817016,12817099-12817215,12817963-12818111,
12818192-12818405,12818505-12818666
Length = 283
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 208 SKREEPTCQLMGEHSKVPS 264
++R+EP C+L+ +H+K PS
Sbjct: 160 NRRQEPWCRLISQHAKNPS 178
>07_03_0342 +
16963528-16963598,16963668-16964235,16964350-16964760,
16964848-16965051,16968663-16969032,16972466-16972601,
16972680-16972779,16972933-16973190,16973276-16973314,
16973420-16973458
Length = 731
Score = 27.5 bits (58), Expect = 6.3
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = +1
Query: 202 KKSKREEPTCQLMGEHSKVP-SGNQGNTXVPEEEIFQTADLFERRNIPQVTLCLYAL--G 372
+KS +PT ++G+H P G V +++F DL+ R + L Y+L
Sbjct: 534 EKSNARKPTTDILGQHDGKPFLGPTNYVVVDFKDLF---DLYRLRAVDTSLLKCYSLLSW 590
Query: 373 RITQKH-PE--FTGPQLGPKMADKNER 444
+ QKH PE F PQ+ +N+R
Sbjct: 591 QWCQKHAPEVVFLNPQVVTVTNLQNDR 617
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,352
Number of Sequences: 37544
Number of extensions: 284733
Number of successful extensions: 634
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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