Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32328
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0373 - 13194723-13195847,13196219-13196809                       29   2.9  
01_03_0163 + 13346586-13347809                                         28   5.1  
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858...    27   8.9  

>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 403 VSEFGGTWFQLRR*WRVETRSVIDFDLRCSAR 308
           V+E G  + QL+R WR + R ++D D R   R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533


>01_03_0163 + 13346586-13347809
          Length = 407

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 206 SWAAAIDLLTNDECRLLLEVED 271
           SW AA+D +T DE R LLE  D
Sbjct: 115 SWDAALDGITADEARALLESID 136


>10_08_0548 -
           18685114-18685230,18685615-18685724,18685779-18685802,
           18686135-18686213,18686346-18686588,18686659-18686823,
           18686960-18687037,18687185-18687231,18687319-18687379,
           18687667-18687723,18688164-18688247,18689292-18689357,
           18689447-18689574,18689693-18689885
          Length = 483

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 315 LQRRSKSITLRVSTRHHRRS*NQVPPNSL 401
           L+RRS S+ L     HH R     PP+ L
Sbjct: 9   LRRRSSSLLLLHHNHHHHRGGGSAPPHPL 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,552,082
Number of Sequences: 37544
Number of extensions: 225870
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)