Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32328
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family pr...    28   3.4  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z68011-2|CAA92013.2|  381|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 112 KTPTSLDINPSGLLFAFVELNHYNNEC 192
           KTP  LD     +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


>AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family
           protein 18, isoform b protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 401 NDLLQQLDSQCKQENIFSNWLEEKVDLPS 487
           N  +Q++D+ C  +NI    +  K+D+P+
Sbjct: 103 NHWMQEVDTYCTNDNIIKMMVANKIDMPN 131


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
 Frame = +3

Query: 39  VCLHAQYKNACQNGALTGQVSPSSQNTNIIRHQ----SLWTFIRIRGTK-----SLQQ*V 191
           +CLH  +K  C N    G   PS+ N   +R       L  FI I         ++ Q  
Sbjct: 69  ICLHKNFKKECFNFKGEGTAIPSTFNEETVRPWVELFHLEIFICILNFTLWIYLAIDQWK 128

Query: 192 RVRRSHGLRPSICSLTMSAVCCSKLRISSMMIVICLK-TFRALQRRSKSITLRVS 353
           R+ +   ++ SI  L++S  C   +RI    + IC+   + +     KSI L++S
Sbjct: 129 RIEKD--VKTSISMLSLS--CSIGVRILFSTVAICISLVYGSKPSLIKSIVLQLS 179


>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 213 LRPSICSLTMSAVCCSKLRISSMMIVICLKTFRA 314
           ++PS C + M    CSK+R S +   + + T  A
Sbjct: 82  IKPSPCDMLMRTEFCSKIRASFLFAFLLVSTSHA 115


>Z68011-2|CAA92013.2|  381|Caenorhabditis elegans Hypothetical
           protein T21B6.2 protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 449 FSNWLEEKVDLPSIFENISEV 511
           F NW++EKV+  S+ + I+E+
Sbjct: 205 FPNWIDEKVNGKSLLDTIAEI 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,929,171
Number of Sequences: 27780
Number of extensions: 201945
Number of successful extensions: 520
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)