Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32323
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410...    28   3.9  
02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727     28   5.1  
09_02_0561 + 10681056-10682285,10682546-10682764                       27   6.8  
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406...    27   8.9  
05_03_0439 + 14028234-14028287,14029394-14029468,14029562-140296...    27   8.9  

>07_01_0551 -
           4105721-4105774,4106090-4106159,4106880-4106945,
           4106985-4107479,4107491-4107672,4107728-4108222
          Length = 453

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 192 AADVAPEGLLTVELPIQPNKLGNISFVA 275
           A DVA EG++TV L ++  K+G ++F A
Sbjct: 172 AVDVADEGIVTVMLAVE--KIGRVAFAA 197


>02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727
          Length = 210

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 341 LPFEHFRGGGSVDVLQLVRLECGHETDI 258
           L  EH R GG    ++LVRL  G E+D+
Sbjct: 132 LRLEHGRAGGEHGPVRLVRLAAGLESDV 159


>09_02_0561 + 10681056-10682285,10682546-10682764
          Length = 482

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 17  RRLPDPQTEH*H*VQRRPDHRAAGNSGTVAFEPS 118
           RRLP+P   H H  +RR D R   +S  + F PS
Sbjct: 62  RRLPNPVAGHYHYSRRRADGRGR-SSRLITFVPS 94


>05_05_0254 -
           23638544-23640090,23640280-23640408,23640619-23640626,
           23641442-23642682
          Length = 974

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 113 PSEQYAEWVRVPRDVIGNRGSCP 181
           P E    W+ VPRD  G   SCP
Sbjct: 47  PPESPLPWILVPRDADGPSFSCP 69


>05_03_0439 +
           14028234-14028287,14029394-14029468,14029562-14029642,
           14029778-14029934,14030056-14030060,14030152-14030226,
           14030332-14030457,14030604-14030822,14031293-14031406,
           14031498-14031533,14031630-14031764
          Length = 358

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 6   WADDDDFQILKPNINIKFKDDLIIGQPAT 92
           W DD  F+I++       ++D++ G P+T
Sbjct: 312 WGDDGYFKIIRGTNECGIEEDVVAGMPST 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,829,157
Number of Sequences: 37544
Number of extensions: 200783
Number of successful extensions: 545
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)