Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32323
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical ...    28   4.6  
U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium chann...    27   6.0  

>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 320  HGSARRVN*QRIHTSTSQSLTHSYSGRTIIRI*VISTAAIFY 445
            H   RR N  R H+S+S  LTH YSG   + + V+  A   +
Sbjct: 1909 HELKRRHNMIRSHSSSSTPLTHLYSGVKGLGVGVLGGATAMF 1950


>AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical
           protein C52E2.4 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = -2

Query: 389 KNA*VIEKSMYEFVVSLPFEHFR 321
           KNA +IE  ++ F+VS+PF++FR
Sbjct: 175 KNAKIIE--LFGFIVSIPFDNFR 195


>U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform b protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 171 GRALRVPAADVAPEGLLTVELPIQPNKLGNISFVATFKSNELKDINGAATTE 326
           G  L  P + + P+G++   +P  P  +GN +   T KS     +NG  T +
Sbjct: 11  GGDLLSPESPMTPDGMILARMPWHPGLIGNWN---TVKSVSCSMLNGDETDQ 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,899,470
Number of Sequences: 27780
Number of extensions: 166754
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)