Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32322
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   2.9  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   5.1  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   6.7  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.9  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.9  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   8.9  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 3   SSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNS 128
           ++ +TS   +  +I T +  +++ +T    TPI S  TSSNS
Sbjct: 158 ATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSNS 199


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 246 QPSTSSIKGLFNTSSNLNSTRYHTH--KKLFTSLV*KFPTSKST 371
           QPS + + G  + S N NS+R  T+  ++ F+S     P+S  T
Sbjct: 41  QPSLNKLGGFSSASLNFNSSRSSTNDDQQTFSSQSDNLPSSPIT 84


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 253 EGWVPGRSLVEVKSTRNKCVLVERLRS 173
           +GWVPG++L  V+    K  ++  L S
Sbjct: 127 DGWVPGKTLFPVEEAIKKGSIIMNLLS 153


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +3

Query: 60  QSTL-WATTGRRTPIYS--KKTSSNSTSV 137
           QS L ++T  RRTP YS   +T S+STSV
Sbjct: 93  QSLLPFSTEVRRTPTYSVMNETDSSSTSV 121


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 3   SSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSV 137
           S K  S PST K   +     ++  +    +P+Y+ K+  +ST V
Sbjct: 654 SPKRQSVPSTPKASLSPRVHKSMTYSPSEASPLYANKSPKSSTMV 698


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = +2

Query: 116 FLQFYQ--RSYEVNARRVLGAAPKPFNQYTFIPSALDFYQTSARDPAFYQLYKRI 274
           F  F Q  R    N +R+L   P   N Y+   S L  Y+   R  + Y   K +
Sbjct: 15  FFSFKQTKRKKNKNKKRILSILPYYKNSYSDFISVLQMYKVHIRMVSIYIFLKAL 69


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 284 IIEFKQYQVPYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFNT 418
           +   K++  P +  ALH    K+     DKMV ++D    DA +T
Sbjct: 225 VTSLKKHTAPVSCLALHGSEKKVLSGSWDKMVYYWDLNTGDAIST 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,345
Number of Sequences: 5004
Number of extensions: 34529
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)