Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32315
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 0.68
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 1.2
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 27 1.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 2.1
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 2.7
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 25 4.8
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 25 6.3
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 25 6.3
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 8.4
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c... 24 8.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 24 8.4
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo... 24 8.4
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 0.68
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -1
Query: 247 AGQRIACIPEAVHWMTSRQLS--PSPATSRNHSPAYLVLA 134
A + +A VHW+ SR+ P P S H LVLA
Sbjct: 826 ADEAVAIYTTFVHWLESRRFQPIPFPPLSYKHDTKLLVLA 865
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 311 LXIFHSIFPIAGLFLNIEEQTGRATYSLYSRGSTLDDVATVV 186
L IF SI + G F + + TG+A + +S + +D V V+
Sbjct: 11 LQIFGSILFLLGFFPHKNDSTGKAMSNQFSPPAVIDQVVFVM 52
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 26.6 bits (56), Expect = 1.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 15 VSLLWPRASCSPARLLMVTD 74
V+ +W R +CSP+RL +T+
Sbjct: 211 VTQVWERGTCSPSRLSFLTE 230
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 2.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 270 KQTCDWKDAVKNXKLKNKERKIKPXLYTE 356
+Q K +KN K+KN ++KP L TE
Sbjct: 149 EQLIQIKVCMKNEKMKNLMEQLKPLLQTE 177
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 2.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 225 IQAIRCPAGLFFDIEKQTCDWKDAVKN 305
++A+RCP L+ + QT WK K+
Sbjct: 32 VRALRCPIWLWPTYDAQTIPWKKKKKS 58
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 4.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1
Query: 223 EYKLYVARPVCSSILRNRPAIGKML 297
+Y + +P+C ++RN+ GK L
Sbjct: 48 DYYQIIQKPICYKMMRNKAKTGKYL 72
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 24.6 bits (51), Expect = 6.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 111 ESLGTRNYARTRYAGEWF 164
+SL +R Y +TRY WF
Sbjct: 47 QSLDSRGYLKTRYNWGWF 64
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 24.6 bits (51), Expect = 6.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 111 ESLGTRNYARTRYAGEWF 164
+SL +R Y +TRY WF
Sbjct: 47 QSLDSRGYLKTRYNWGWF 64
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 245 GRFVLRY*ETDLRLERCCEKL 307
GRF+LRY ET L+++ E +
Sbjct: 587 GRFLLRYPETKLQMQSFLEAI 607
>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 347 QXRLYFTLLVLELXIFHSIFPI 282
Q R+Y+TLL+L + IF+ + I
Sbjct: 233 QTRIYYTLLLLGVLIFYMTWGI 254
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 39 SCSPARLLMVTDGGDKLTS 95
SC+PA +L+VT G TS
Sbjct: 169 SCNPATVLIVTTSGSTSTS 187
>SPAP27G11.07c |||serine/threonine protein kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 238
Score = 24.2 bits (50), Expect = 8.4
Identities = 6/27 (22%), Positives = 19/27 (70%)
Frame = +2
Query: 125 KELCKDKVRRRMVPAGGRRGRQLSRRH 205
+E+C+ ++ ++++P R G ++++ H
Sbjct: 114 REICECEIEKKLIPLMKRIGSEVAKMH 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,129
Number of Sequences: 5004
Number of extensions: 24896
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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