Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32315
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   1.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   4.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   9.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   9.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 140 DKVRRRMVPAGGRRGRQLSRRHPVYC 217
           D VRRRM+   GR   ++  +  ++C
Sbjct: 234 DTVRRRMMMQSGRAKSEILYKSTLHC 259


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 140 DKVRRRMVPAGGRRGRQLSRRHPVYC 217
           D VRRRM+   GR   ++  +  ++C
Sbjct: 234 DTVRRRMMMQSGRAKSEILYKSTLHC 259


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 264 IEKQTCDWKDAVKNXKLKNKERKI 335
           +EK   ++K  +K  +L  K+RKI
Sbjct: 432 LEKHLIEYKKMLKIKRLFGKDRKI 455


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 187 SPSPATSRNHSPA 149
           S +P T R H PA
Sbjct: 393 SSTPGTGREHDPA 405


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 233 YTLPGRFVLRY*ETDLRLERCCE 301
           YT PG  +  Y +T + + + CE
Sbjct: 182 YTNPGNPLAHYDQTAIEIWKQCE 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,739
Number of Sequences: 438
Number of extensions: 2104
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)