Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32311
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   0.56 
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    25   3.9  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   3.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   5.2  
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    24   6.8  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    24   6.8  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    23   9.0  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    23   9.0  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    23   9.0  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    23   9.0  

>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 0.56
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 137 KPGRYVADPGRYDPSRDN 190
           KPG YV+D   Y P +DN
Sbjct: 235 KPGSYVSDRASYTPQQDN 252


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 44  LSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYV 154
           ++ T  +A+  GK TP +    Y  ++ FVY  G ++
Sbjct: 255 MTRTRLIASGPGKETPLETFSYYGPLNFFVYNAGYHI 291


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 182 GWGHSGLDQLHSGLAYRRMEKQ*SK 108
           G+GH G   LH  +A R+ +K+  K
Sbjct: 440 GFGHMGDGNLHLNIAVRQFDKRVEK 464


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 98  YNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYIPDNSGAYN 229
           YN V    SP+ +    +V + G   P   +SG +  D++   N
Sbjct: 146 YNSVPYGSSPYDFSNSSFVGNSGSGTPLDGDSGSFYADSANLTN 189


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 136 IDEWRNSRVNSVVLERSVLSSFGGQRH 56
           +D W+ S  NS     S   +FG   H
Sbjct: 188 VDAWKKSFENSPYFSESYFETFGKMHH 214


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 101 CTGKECTFQFRRPAPLSETGRL 36
           C  K+C  + RR  P+  TG+L
Sbjct: 16  CRPKKCRQECRRSCPVVRTGKL 37


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +2

Query: 56  VALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYIPDNSGAY 226
           +A+  ETGK    +   V +   PF  K     ADP    P      R +  ++G +
Sbjct: 262 LAIDRETGKEYQIKATSVVNATGPFSDKILEMDADPQGEPPKTAQFPRMVVPSAGVH 318


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 110 YSTVSPFVYKPGRYVADPGRYDPSRDNSGR 199
           YST S   Y+P    A   RYDP     GR
Sbjct: 119 YSTQSYTGYEPTSMRAIRARYDPYEQARGR 148


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 212 CRECNGQSCRGWGHSGLDQLHSGLAYR 132
           C  C G    G G++ L  L SGLA+R
Sbjct: 289 CLLCLGYYDIGMGNTSLGWLLSGLAFR 315


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 102 LYWKGVYFPVSAASATVRDRQIAKKTRIYRCYEA 1
           LYW G +F + A    +    I +  ++ R Y+A
Sbjct: 126 LYWLGEFFGIQAKLFPLFQGSINENEKLSRYYQA 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,011,890
Number of Sequences: 5004
Number of extensions: 15378
Number of successful extensions: 54
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)