Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32311
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0518 + 18486315-18486462,18486495-18486712,18486763-184868...    27   3.6  
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104...    27   3.6  
03_05_0501 - 24944533-24945507                                         26   6.2  
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351...    26   6.2  
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397...    26   6.2  

>10_08_0518 +
           18486315-18486462,18486495-18486712,18486763-18486808,
           18487436-18487709,18487797-18488052
          Length = 313

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 32  LAICLSLTVALAAETGKYTPFQYNRVYS---TVSPFVYK-PGRYVADPGRYDPSR 184
           LAI  +L V   +    Y+  Q  ++YS   TV   V + PGR  AD G+YD  R
Sbjct: 112 LAILDALAVPKVSSFESYSCMQTVKLYSLIVTVEELVLQQPGRAEADFGKYDIRR 166


>03_05_1143 +
           30709825-30709926,30710105-30710260,30710356-30710439,
           30710769-30710882,30711019-30711111,30711888-30711977,
           30712157-30712227,30712300-30712374,30712481-30712568,
           30712748-30712806,30712893-30712956,30713030-30713095,
           30713283-30713435,30713522-30713626,30713739-30713974,
           30714104-30714173,30714286-30714339,30714501-30714557,
           30714662-30714741,30716056-30717919
          Length = 1226

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 127 WRNSRVNSVVLERSVLS---SFGGQRHCQRQADCQKDT 23
           W+++ V  V+  R + S   S  GQ+ C RQ  CQ  T
Sbjct: 28  WKDNNVQVVIRVRPLSSGEISVQGQKRCVRQDSCQSIT 65


>03_05_0501 - 24944533-24945507
          Length = 324

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 212 CRECNGQSCRGWGHSGLDQ--LHSGLAYRRMEKQ*SKLGCTGKECTFQFRRPAPLSET 45
           CR    Q   G G  G D+  +   +A R+ +K    LG    E    +RRP P + T
Sbjct: 44  CRSQEEQPDGGGGGGGDDKENVSPEVAPRKAKKMRVSLGAAEDEAAAYYRRPDPATAT 101


>01_05_0652 -
           23934604-23934636,23934783-23934893,23935000-23935188,
           23935893-23936012,23936109-23936273,23936638-23936790,
           23936867-23936976,23937280-23937397,23938197-23938427,
           23938984-23939175,23939661-23939945,23940637-23940686,
           23940846-23940921,23941048-23941135,23941689-23941771,
           23941883-23942248,23942462-23942476,23942909-23943018,
           23943134-23943231,23943961-23944019
          Length = 883

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 200 NGQSCRGWGHSGLDQLHSGLAYRR 129
           N  + +GW  +GL+QL SGL  ++
Sbjct: 305 NNLTLKGWPLTGLEQLRSGLLQQK 328


>01_01_0542 +
           3975500-3975546,3976273-3976370,3976694-3976830,
           3977518-3977871,3977953-3978041,3978502-3978589,
           3978659-3978734,3978858-3978907,3979032-3979340,
           3979803-3979982,3980086-3980325,3980471-3980582,
           3980931-3981040,3981162-3981311,3981777-3981932,
           3982289-3982405,3982759-3982839,3983338-3983478
          Length = 844

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 200 NGQSCRGWGHSGLDQLHSGLAYRR 129
           N  + +GW  +GLDQL SG   ++
Sbjct: 303 NNLTLKGWPLTGLDQLRSGFLQQK 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,132,032
Number of Sequences: 37544
Number of extensions: 113895
Number of successful extensions: 366
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)