Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32311
(330 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 28 1.8
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 28 1.8
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 27 2.4
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 27 2.4
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 27 2.4
Z75955-2|CAB00112.1| 355|Caenorhabditis elegans Hypothetical pr... 26 5.5
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 26 5.5
U53139-5|AAK18933.2| 322|Caenorhabditis elegans Serpentine rece... 26 7.3
U21319-1|AAC46673.2| 258|Caenorhabditis elegans Hypothetical pr... 25 9.7
U20861-2|ABD63243.1| 254|Caenorhabditis elegans Hypothetical pr... 25 9.7
U20861-1|AAA62293.1| 302|Caenorhabditis elegans Hypothetical pr... 25 9.7
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 148 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 20
+AW D + +N + E + LS+ Q+HC+ CQ+D +
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQY 542
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 148 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 20
+AW D + +N + E + LS+ Q+HC+ CQ+D +
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQY 542
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 64 GRRNWKVHSFPVQPSLLY 117
GR++WK H F ++PS LY
Sbjct: 340 GRKSWKKHYFVLRPSGLY 357
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 64 GRRNWKVHSFPVQPSLLY 117
GR++WK H F ++PS LY
Sbjct: 357 GRKSWKKHYFVLRPSGLY 374
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 64 GRRNWKVHSFPVQPSLLY 117
GR++WK H F ++PS LY
Sbjct: 469 GRKSWKKHYFVLRPSGLY 486
>Z75955-2|CAB00112.1| 355|Caenorhabditis elegans Hypothetical
protein R07B7.3 protein.
Length = 355
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 89 PFQYNRVYSTVSPFVYKPGRYVAD 160
P Q N V V P Y+P +YV D
Sbjct: 319 PVQRNNVVRQVQPVQYRPVQYVTD 342
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 62 LAAETGKYTPFQYNRV-YSTVSPFVYKPGRYV-ADPGRYDPSRDNSGRYIPD 211
L E KY PF+ V Y+ + G+ V DP RD G+YIPD
Sbjct: 54 LTQELKKYAPFEIKVVRYTLMDRLKSVLGKRVQCDPAGI--LRDQEGKYIPD 103
>U53139-5|AAK18933.2| 322|Caenorhabditis elegans Serpentine
receptor, class xa protein4 protein.
Length = 322
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 89 ECTFQFRRPAPLSETGRLPKRHAFTVV 9
EC+ F A E PKRH T++
Sbjct: 155 ECSLNFNARASFHEAACAPKRHQLTLI 181
>U21319-1|AAC46673.2| 258|Caenorhabditis elegans Hypothetical
protein C30G12.4 protein.
Length = 258
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 41 CLSLTVALAAETGKYTPFQYN 103
CL+LT+ A TG Y Q+N
Sbjct: 188 CLTLTLTCTAGTGNYAFMQFN 208
>U20861-2|ABD63243.1| 254|Caenorhabditis elegans Hypothetical
protein C28H8.5b protein.
Length = 254
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -3
Query: 145 AWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTHLPLL 8
AW++ WR+ ++G Q AD +DTH PLL
Sbjct: 88 AWMVGRWRSEFGGKAFFPTIPKFTYGEQVDITI-ADNSQDTHTPLL 132
>U20861-1|AAA62293.1| 302|Caenorhabditis elegans Hypothetical
protein C28H8.5a protein.
Length = 302
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -3
Query: 145 AWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTHLPLL 8
AW++ WR+ ++G Q AD +DTH PLL
Sbjct: 136 AWMVGRWRSEFGGKAFFPTIPKFTYGEQVDITI-ADNSQDTHTPLL 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,763,651
Number of Sequences: 27780
Number of extensions: 92079
Number of successful extensions: 349
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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