Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32307
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         28   0.84 
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    27   1.9  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   1.9  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   7.9  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 329 LXSVRSFPQDSWRRYKILKQSHPVKRMIIRHWG 427
           L S  +F  + W+R+  LK  + +  M +R WG
Sbjct: 425 LASTLAFNTEQWQRFLTLKSFNVIGSMQLRSWG 457


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 349 ETSDGXQLLDGSISLSPLYPVPTIDLHVRIATVL 248
           E SDG +LL GS  +SP+  V  +  +V I+ ++
Sbjct: 548 EYSDGFELLYGSALVSPIKSVERVTNNVYISDII 581


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = +3

Query: 78  RRSLREDEIIELRS*FSHSRGVSFPISE*RRALSTNAGTRKMVNYAWSGRSQGKP*WRTV 257
           RR+L  D  + L +  SH   ++    + R  L+ + G  +++N   +GR Q      T+
Sbjct: 25  RRALDCDSEMSLMNSLSHLVYLTSTSPKIREILTMDGGLMRLMNILRAGRGQTFA-RMTI 83

Query: 258 AILTCKSIVGTGYRGERLI 314
             L  + +V  G RG   I
Sbjct: 84  WQLALQCVVNVGIRGSEAI 102


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 279 SICTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 175
           S  TS S ++SI  S   + + HSSPSF  + L S
Sbjct: 460 SPATSPSNQASIHASFTKESSTHSSPSFTLESLFS 494


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 193 VPAFVLRARLHSLIGKETPRECENH 119
           VP FV    LH   G +TP  C  H
Sbjct: 622 VPGFVSSPNLHLAGGSDTPIYCIEH 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,871
Number of Sequences: 5004
Number of extensions: 34966
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)