Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32307
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501...    28   4.5  
11_06_0661 - 26009838-26010950,26011302-26011802                       27   7.8  
06_01_0750 + 5624983-5625173,5626229-5626291,5626421-5626967,562...    27   7.8  

>04_03_0897 -
           20646750-20646918,20647927-20648038,20649650-20650108,
           20650237-20650330,20650449-20650525,20650637-20650688,
           20650770-20650927,20651191-20651281,20651465-20652529
          Length = 758

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 200 DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 310
           DG+  +V + SGE    D+S  ++Q+D+  ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472


>11_06_0661 - 26009838-26010950,26011302-26011802
          Length = 537

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 206 HHLSGPSICAQSAPSFTDWK 147
           HHL GP+  + S+P    WK
Sbjct: 297 HHLHGPTSSSSSSPVMASWK 316


>06_01_0750 +
           5624983-5625173,5626229-5626291,5626421-5626967,
           5627075-5627226,5627317-5627533
          Length = 389

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 257 YGPPSGFPLTST*PGIV-HHLSGPSICAQSAPSFTDW 150
           +GP   FP +S+  G   HH+ G +  A +A S + W
Sbjct: 156 HGPVVQFPWSSSASGSAGHHVDGAAAAAATASSASSW 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,928,643
Number of Sequences: 37544
Number of extensions: 242128
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)