Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32307
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical...    27   5.3  
Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical
           protein Y71G12B.25 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -3

Query: 212 IVHHLSGPSICAQSAPSFTDWKGDASGVRKSRT*LDNFILPERTSSVRLHFRYAFQF 42
           ++  L    I   SA   TD  G A+G+      L +FILP   S +  H  Y F F
Sbjct: 355 LLFDLKNCQIHENSAVELTDL-GKATGLASMVQWLTHFILPIYASQLVEHLHYTFAF 410


>Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical
           protein F45E6.3 protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 48  KGVTKVKANARRSLREDEIIELRS*FSHSRGVSFPIS 158
           K ++++  + RR   E +  +L S F H  G+ +P+S
Sbjct: 116 KVLSQIDKDVRRLYPEIQFFQLLSRFPHQHGMKYPLS 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,066,696
Number of Sequences: 27780
Number of extensions: 203122
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)