Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32302
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical pr...   149   9e-37
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...   149   9e-37
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    89   2e-18
AJ132193-1|CAA10601.1|  149|Caenorhabditis elegans calmodulin pr...    46   2e-05
AF016429-2|AAB65364.1|  149|Caenorhabditis elegans Calmodulin pr...    46   2e-05
AC084159-17|AAK39364.1|  116|Caenorhabditis elegans Hypothetical...    39   0.002
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr...    33   0.12 
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p...    31   0.49 
AF098992-4|AAK73869.2|  250|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    27   6.0  
U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical protein
            W04D2.1b protein.
          Length = 894

 Score =  149 bits (362), Expect = 9e-37
 Identities = 68/113 (60%), Positives = 86/113 (76%)
 Frame = +3

Query: 3    SLGYSIGKDRQGELDFQRILAVVDPNNTGYVSFDSFLDFMTRESTDTDTAEQVIDSFRIL 182
            S+GY+I   R+G+ +  R+LA VDPN  G V F++FLDFMT+E++D DT EQ+IDSFRIL
Sbjct: 782  SVGYTIRPGREGDAELHRVLAHVDPNRMGRVPFEAFLDFMTKENSDQDTVEQMIDSFRIL 841

Query: 183  AGDKPYITAEELRRELPPDQAEYCVARMPPYRGPGAPPGSLDYMAFSTALYGE 341
            A  K +ITA+EL RELP DQA YC+ARM P R PGAPP S DY+ FS +LY +
Sbjct: 842  ASGKTFITADELERELPRDQAAYCMARMAPSREPGAPPRSFDYVTFSRSLYSQ 894


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical protein
            W04D2.1a protein.
          Length = 920

 Score =  149 bits (362), Expect = 9e-37
 Identities = 68/113 (60%), Positives = 86/113 (76%)
 Frame = +3

Query: 3    SLGYSIGKDRQGELDFQRILAVVDPNNTGYVSFDSFLDFMTRESTDTDTAEQVIDSFRIL 182
            S+GY+I   R+G+ +  R+LA VDPN  G V F++FLDFMT+E++D DT EQ+IDSFRIL
Sbjct: 808  SVGYTIRPGREGDAELHRVLAHVDPNRMGRVPFEAFLDFMTKENSDQDTVEQMIDSFRIL 867

Query: 183  AGDKPYITAEELRRELPPDQAEYCVARMPPYRGPGAPPGSLDYMAFSTALYGE 341
            A  K +ITA+EL RELP DQA YC+ARM P R PGAPP S DY+ FS +LY +
Sbjct: 868  ASGKTFITADELERELPRDQAAYCMARMAPSREPGAPPRSFDYVTFSRSLYSQ 920


>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
            protein.
          Length = 2427

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 48/118 (40%), Positives = 74/118 (62%), Gaps = 7/118 (5%)
 Frame = +3

Query: 3    SLGYSIGKDRQG--ELDFQRILAVVDPNNTGYVSFDSFLDFM-TRESTDTDTAEQVIDSF 173
            +LGY +    +G  E +FQRIL +VDPN  GYV+   ++ FM ++E+ +  ++E++  +F
Sbjct: 2308 ALGYDLPMVDEGQPEPEFQRILDIVDPNRDGYVTLQEYMAFMISKETENIQSSEEIEMAF 2367

Query: 174  RILAGD-KPYITAEELRRELPPDQAEYCVARMPPYR---GPGAPPGSLDYMAFSTALY 335
            R L+ + +PY+TAEEL   L P+QAE+C+ RM PY       +  G LDY  F  AL+
Sbjct: 2368 RALSKEFRPYVTAEELYANLTPEQAEFCIRRMKPYMDAISGRSIQGGLDYEQFVHALF 2425


>AJ132193-1|CAA10601.1|  149|Caenorhabditis elegans calmodulin
           protein.
          Length = 149

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 39  ELDFQRILAVVDPNNTGYVSFDSFLDFMTRESTDTDTAEQVIDSFRILAGD-KPYITAEE 215
           E + Q ++  VD +  G + F  FL  M R+  DTD+ E++ ++FR+   D   +I+A E
Sbjct: 46  EAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAE 105

Query: 216 LR 221
           LR
Sbjct: 106 LR 107


>AF016429-2|AAB65364.1|  149|Caenorhabditis elegans Calmodulin
           protein 1 protein.
          Length = 149

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 39  ELDFQRILAVVDPNNTGYVSFDSFLDFMTRESTDTDTAEQVIDSFRILAGD-KPYITAEE 215
           E + Q ++  VD +  G + F  FL  M R+  DTD+ E++ ++FR+   D   +I+A E
Sbjct: 46  EAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAE 105

Query: 216 LR 221
           LR
Sbjct: 106 LR 107


>AC084159-17|AAK39364.1|  116|Caenorhabditis elegans Hypothetical
           protein Y73B3A.12 protein.
          Length = 116

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 69  VDPNNTGYVSFDSFLDFMTRESTDTDTAEQVIDSFRILAGD-KPYITAEELR 221
           VD +  G + F  FL  M R+   TD+ E++ ++FR+   D   +I+A ELR
Sbjct: 5   VDADGNGTIDFPEFLTVMARKMKGTDSEEEIREAFRVFDKDGNGFISAAELR 56


>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
            C50C3.2 protein.
          Length = 2107

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/107 (16%), Positives = 47/107 (43%)
 Frame = +3

Query: 15   SIGKDRQGELDFQRILAVVDPNNTGYVSFDSFLDFMTRESTDTDTAEQVIDSFRILAGDK 194
            S G +   E   +  + ++DP+ TG++    ++ +M +  T       ++D    +    
Sbjct: 2006 SQGYNFSAENTLKETMTLLDPSTTGHIQKHDYVRYMVKHET-----TNILDDHSAIEDAL 2060

Query: 195  PYITAEELRRELPPDQAEYCVARMPPYRGPGAPPGSLDYMAFSTALY 335
              + A ++   +P  +AE+ ++++  +    +    L+Y  F  + Y
Sbjct: 2061 KNLDARKISDSMPRKEAEFFMSKIAKHAETSSDQVYLEYKDFVNSFY 2107


>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
           protein T08A11.2 protein.
          Length = 1322

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 22/91 (24%), Positives = 40/91 (43%)
 Frame = +3

Query: 15  SIGKDRQGELDFQRILAVVDPNNTGYVSFDSFLDFMTRESTDTDTAEQVIDSFRILAGDK 194
           SIG   + ++D +  +  V   +T Y     F++ +   S DTD         + +A  +
Sbjct: 65  SIGTGEEDDVD-EDSMPSVQKKSTNYAQPHKFIEEVAAASEDTDPFADT--RTKTIAERQ 121

Query: 195 PYITAEELRRELPPDQAEYCVARMPPYRGPG 287
                  +RR++ PD+A+  V + P  R  G
Sbjct: 122 SKYHERAMRRQISPDRADAFVDQTPDNRNRG 152


>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
           protein T08A11.2 protein.
          Length = 1322

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 22/91 (24%), Positives = 40/91 (43%)
 Frame = +3

Query: 15  SIGKDRQGELDFQRILAVVDPNNTGYVSFDSFLDFMTRESTDTDTAEQVIDSFRILAGDK 194
           SIG   + ++D +  +  V   +T Y     F++ +   S DTD         + +A  +
Sbjct: 65  SIGTGEEDDVD-EDSMPSVQKKSTNYAQPHKFIEEVAAASEDTDPFADT--RTKTIAERQ 121

Query: 195 PYITAEELRRELPPDQAEYCVARMPPYRGPG 287
                  +RR++ PD+A+  V + P  R  G
Sbjct: 122 SKYHERAMRRQISPDRADAFVDQTPDNRNRG 152


>AF098992-4|AAK73869.2|  250|Caenorhabditis elegans Hypothetical
           protein F53C3.6a protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -3

Query: 295 GGAPGPRYGGMRATQYSAWSGGSSRRNSS---AVMYGLSPAKILKLS-MTCSAVSVSVDS 128
           GG  G R GG R++ +S++ GGSS  +SS    V +  S ++    S MT + V +S  S
Sbjct: 53  GGGGGFRSGGARSS-FSSFRGGSSHYSSSFRQNVFHTSSTSRTFVFSPMTRTIVIISPAS 111

Query: 127 LVIKSRN 107
            +I   N
Sbjct: 112 PMIYENN 118


>Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical
           protein M05D6.7 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 198 YITAEELRRELPPDQAEYCVARMPPYRGPGAPPGS 302
           +  AE+LR E P D    C  ++  +   G+PPGS
Sbjct: 252 FYCAEKLRNESPEDFEILCNTKISHHYLEGSPPGS 286


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 307 SREPGGAPGPRYGGMRATQYSAWSGGSSRRNSSA 206
           SR P  +P PR    R++  S+ S GSS R+SS+
Sbjct: 531 SRSPSRSPSPR-RRQRSSSNSSRSSGSSSRSSSS 563


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 307 SREPGGAPGPRYGGMRATQYSAWSGGSSRRNSSA 206
           SR P  +P PR    R++  S+ S GSS R+SS+
Sbjct: 531 SRSPSRSPSPR-RRQRSSSNSSRSSGSSSRSSSS 563


>U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical
           protein C01C4.2 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  NNTGYVSFDSFLDFMTREST 137
           NNTGYV    F+++ T  ST
Sbjct: 75  NNTGYVEMSKFIEYRTLPST 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,080,445
Number of Sequences: 27780
Number of extensions: 190644
Number of successful extensions: 695
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)