Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32299
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...   144   9e-36
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    69   4e-13
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    54   2e-08
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    43   3e-05
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    30   0.18 
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    29   0.55 
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   3.8  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   5.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   5.1  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   8.9  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   8.9  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.9  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.9  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score =  144 bits (348), Expect = 9e-36
 Identities = 73/114 (64%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
 Frame = +3

Query: 177 VPPTKLTVLDNGLRIATEDSG-AATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK 353
           +P T+ T L NGL +ATE    A TATV + +DAGSR ET+KNNG AHFLEH+AFKGT  
Sbjct: 19  LPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKN 78

Query: 354 RSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLA 515
           RSQ  LEL  EN GAHLNAYTSREQTV+YA    N VP AV +LADI+ NSS++
Sbjct: 79  RSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSIS 132


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 68.9 bits (161), Expect = 4e-13
 Identities = 31/99 (31%), Positives = 58/99 (58%)
 Frame = +3

Query: 201 LDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELL 380
           L NG+    +      + +G+++ AGSRYET K +GV+HF++ +AF+ T +    +++  
Sbjct: 51  LKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAK 110

Query: 381 VENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADII 497
           +EN+G +    TSRE  ++ A    +DV    ++LA+ +
Sbjct: 111 LENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETV 149


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 30/96 (31%), Positives = 51/96 (53%)
 Frame = +3

Query: 210 GLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVEN 389
           G+  A  ++  AT ++ + I+AGSRY+     GV+H LE  AFK T +RS   +    E 
Sbjct: 30  GVSFAGRETPTATGSLSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESEL 87

Query: 390 MGAHLNAYTSREQTVFYAKCLANDVPVAVEILADII 497
           +G  L+   +RE  +  A+ L   +     +LA+++
Sbjct: 88  LGGQLSTQITREHIILTARFLNEYLEYYARLLAEVV 123


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +3

Query: 189 KLTVLDNGLRIA-TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQ 362
           +L  L+N L +    D     A+  + +  GS+    +  G+AHF EH+ F GT K   +
Sbjct: 25  RLIKLENDLEVLLVRDPETDNASAAIDVHIGSQSNPRELLGLAHFCEHLLFMGTKKYPDE 84

Query: 363 TDLELLVENMGAHLNAYTSREQTVFY 440
            +    +E+     NAYT+   T +Y
Sbjct: 85  NEYRKYLESHNGISNAYTASNNTNYY 110


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 276 GSRYETSKNNGVAHFLEHMAFKGTSKRSQTD--LELLVENMGAHLNAYTSREQTVFYAKC 449
           G +     + G+ H LEH    G++K    D   ++L  ++   +NA+T+ + T FY   
Sbjct: 78  GFQTPAENDEGIPHILEHTTLCGSNKYPVRDPFFKMLNRSLATFMNAFTASDFT-FYPFA 136

Query: 450 LAN 458
             N
Sbjct: 137 TVN 139


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 369 SPSVIFYWYL*KPCVQGNERHHCSWRFHS 283
           +PS    W L    ++   RHHC W++++
Sbjct: 329 NPSSPIQWSLISKNMRNRHRHHCRWKYYT 357


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 391 WVHT*TPTPPGNKQFFTQNASLMTFP 468
           W H  TPT P + Q  T N+SL   P
Sbjct: 361 WNHCATPTIPVSLQVLTPNSSLKVDP 386


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 326 FKEMSDTIVLGGFIAGASVDPESYSGSGGSRIFSSN 219
           F+ + +  + G +I    +D ++ +  GGSR+F  N
Sbjct: 328 FEHIYEANIFGLYIQSPQLDIQTVAAGGGSRLFWRN 363


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 277 PASIQSPTVAVAAPESSVAIRKPLSSTVS 191
           P+S++ P      P S ++ + P S+TVS
Sbjct: 189 PSSLEKPAGTGDLPSSEISTKAPASTTVS 217


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 279 SRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVENMGAHLN--AYTSREQTVFYAKCL 452
           S +   +  GV H ++ +A    + R  T  +L +  +  + N  A+ ++   +F+    
Sbjct: 198 SAFAVIQPEGVDHEVQVLAL---ASRLPTGSKLSIVEVDRNPNNPAFATKTVDLFFPPEA 254

Query: 453 ANDVPVAVEI 482
            ND P+A+EI
Sbjct: 255 VNDFPIAIEI 264


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 351 KRSQTD-LELLVENMGAHLNAYTSREQTVF 437
           +R++ D LE  +  +GAH N   SR+ T+F
Sbjct: 110 ERAKIDHLEQQMHTVGAHRNKNESRKHTIF 139


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +3

Query: 318 FLEHMAFKGTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEIL 485
           FL+ +  +  S   + DL  L+E +    + +     T+FY K L +  P +++++
Sbjct: 29  FLDKLVVEVDSLVHEQDLRPLLEFISPTESWFLLGTATIFYIKLLTHPDPESIDVV 84


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 429 FVPGRCRRSSVHPCFLPVVLSPSVIFYWY 343
           FV G+ R SS+  CF   V +  V++Y+Y
Sbjct: 842 FVNGQFRVSSISFCFTHAV-TEKVLYYYY 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,162
Number of Sequences: 5004
Number of extensions: 43936
Number of successful extensions: 108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)