Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32292
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 69 3e-13
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 28 0.95
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 1.3
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 27 1.7
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 27 1.7
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 27 2.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 2.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.8
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 5.1
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 5.1
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 5.1
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S... 25 6.7
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 6.7
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 25 8.9
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 8.9
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 8.9
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 69.3 bits (162), Expect = 3e-13
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 248 TAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNA-TNGAQ 424
T S+ NR ++ + FL G ++ YV+ MY+AW DPNSVHASW A+F+N G
Sbjct: 28 TCLSSLQQNRTFATQPTDDFLTGGAADYVDEMYDAWKKDPNSVHASWQAYFKNVQERGVS 87
Query: 425 PGAAYTPPPNL 457
P A+ PP L
Sbjct: 88 PSKAFQAPPLL 98
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 0.95
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Frame = +2
Query: 185 FNISKSGQSERFASWLLNKPQTAAVSVNA--NRLKSSTAAEPFLNGSSSAYVETMYNAWL 358
FN+ K+ E + ++KP + + N N L+ + A S SA N +
Sbjct: 514 FNVFKNVGEEHQGAEQIDKPFSCPPTWNTGPNSLQQTIANSRPEGNSGSAKKAAAANPMI 573
Query: 359 AD---PNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGG 514
PNS S + T P Y P P PY +N TS+ PS G
Sbjct: 574 PSIVLPNSAMPSAMPMYPTPTMPYIP-VGY-PVPGYTPYMRNPSQHTSVAPSPNG 626
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +2
Query: 239 KPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETM-YNAWLADPNSVHASWDAFFRNATN 415
KP + + N N + + + NG++S+ V Y ++ S F T
Sbjct: 360 KPMASPMLPNVNSMPYLSNGDHNNNGNTSSPVSRFSYGQHTSNVPSTQKLPSNF--RVTQ 417
Query: 416 GAQPGAAYTPPPNLAPYNK 472
GA P Y PPP + P K
Sbjct: 418 GAPPSHTYGPPPPVQPKPK 436
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 416 GAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSG 511
G G+ Y PPPN+ K++ L+ L SSG
Sbjct: 67 GRPIGSVYVPPPNVKNEEKDDA-LSKLAASSG 97
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 211 TLARFRDVKHYPCSMHDCYLL*PPGVSDL*HCSNKTKV 98
TL R D + S C + PGVSD +CS T++
Sbjct: 41 TLVRICDECAFGSSQDRCIICGAPGVSDCYYCSECTRM 78
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +2
Query: 173 ARIVFNISKSGQSERFASWLLNKPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNA 352
A + N+ S E+ S Q VN N S AEP NGS++A N
Sbjct: 183 ADTMLNLESSENREQPTSLKEENTQEDDEKVNGNLANISKRAEPQNNGSTNASSLQSSNY 242
Query: 353 WLADPNSVHAS 385
+P H++
Sbjct: 243 LPTNPTLTHSN 253
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 422 QPGAAYTP--PPNLAPYNKNEVPLTSLVPSSG 511
QP +A+ P P LAP N+N +++ P+ G
Sbjct: 1733 QPASAHLPNLQPTLAPINQNAYVPSNIAPAMG 1764
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/65 (21%), Positives = 35/65 (53%)
Frame = +2
Query: 191 ISKSGQSERFASWLLNKPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPN 370
+S S Q +S L +A ++ +++ +S+++ L+ SSS+ V + ++ ++ +
Sbjct: 84 VSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSS 143
Query: 371 SVHAS 385
H+S
Sbjct: 144 LSHSS 148
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 302 PFLNGSSSAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGAAYTP 445
P N + SA + + ++D PN H DAF ++ + QP +A P
Sbjct: 9 PVGNETKSAALNALPKIKISDSPNRHHNLVDAFMQSPSYSTQPKSAVEP 57
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 5.1
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 89 GLLDLRFVR--TVSKV*HTRGSQQITIMHRARIVFNISKSGQSERFASWLLNKPQTAAVS 262
GL ++ F T S V G + I + V +KSG+S++ SWL +
Sbjct: 172 GLREVTFALFITFSIVPIITGILTVYIYKKKYCVIKFNKSGRSKKKDSWLKRSKDELLRT 231
Query: 263 VNANRLKSSTAAEPFL 310
+AN L + EP +
Sbjct: 232 DSANLLTLNDNDEPVM 247
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 285 APPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTR 383
+P + P+++APV+ TS T + TP R
Sbjct: 77 SPKKATPAAVAPVEATSAVDTSEAVASMTPNKR 109
>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 297 AAVELFSLLAFTETAAVCGLFRSHDANLSLWPD 199
AAV+L L A+C L R D +S + D
Sbjct: 146 AAVDLCKLAGLPPVGAICELVREEDGLMSRFDD 178
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 317 SSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPP 451
SS +VET Y A+PNS+ +D ++NG AY P
Sbjct: 118 SSPFFVETQYAYQKANPNSIAFLYD--LSQSSNGTLYMRAYQLTP 160
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -3
Query: 439 VCGAWLSSVCRIAEKCIPRRVYGVWVGEPC 350
VC WL +C+ E+C Y + PC
Sbjct: 53 VCKHWLRGLCKKGEQCDFLHEYNLKKMPPC 82
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 305 FLNGSSSAYVETMYNA 352
FLNG+SS Y++ +Y +
Sbjct: 184 FLNGTSSPYIDAIYGS 199
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +2
Query: 323 SAYVETMYNAWLADP-NSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLV 499
S Y+ + W P + +A+W + N Y P N+ P +PLT
Sbjct: 74 SKYIGATVSGWAPGPLDGSNAAWREYITLDVN-----LVYFVPKNITPSQAATLPLTFTT 128
Query: 500 PSSG 511
S G
Sbjct: 129 ASQG 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,477
Number of Sequences: 5004
Number of extensions: 43123
Number of successful extensions: 158
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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