Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32292
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 56 1e-08
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 52 3e-07
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 1.7
08_01_0914 + 9010613-9013316,9013537-9013748 29 2.2
06_03_0219 - 18227559-18227858,18227864-18228340 29 2.2
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 29 2.2
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 29 2.9
12_02_1046 + 25662715-25662884,25663163-25663757 28 3.9
10_08_0974 + 21969713-21971914 28 5.1
01_04_0051 + 15430980-15431591 27 6.8
11_06_0010 + 19235419-19236450 27 8.9
08_02_1084 - 24232968-24234779 27 8.9
08_01_1017 - 10284284-10284447,10285887-10286186,10286340-10286478 27 8.9
07_03_1629 - 28246440-28247339 27 8.9
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 27 8.9
01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820 27 8.9
01_03_0221 - 13916129-13916504,13917183-13917217 27 8.9
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 56.4 bits (130), Expect = 1e-08
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +2
Query: 287 STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAA 436
S + FL+G+SS Y+E + AW ADP+SV SWD FFRN A P +A
Sbjct: 46 SRLTDSFLDGTSSVYLEELQRAWEADPSSVDESWDNFFRNFLGQAAPSSA 95
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +2
Query: 287 STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRN 406
S + FL+G+SS Y+E + AW ADP SV SWD FFRN
Sbjct: 54 SRLTDSFLDGTSSVYLEELQRAWEADPTSVDESWDNFFRN 93
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 285 LFSLLAFTETAAVCGLFRSHDANLSLWPDLEMLNTILARCM 163
L L A + CGLF HD +W L +L++IL CM
Sbjct: 3232 LADLEALDHMLSACGLFPYHDHCFFVW-KLSLLDSILDLCM 3271
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 239 KPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNG 418
K Q + +S+ + L TA+ +NG + + + + DP V +SWDA N TN
Sbjct: 4 KWQLSMLSLLTHALLLLTASSQTINGDDLSALMSFKSLIRNDPRGVLSSWDA-IGNGTNM 62
Query: 419 AQP 427
P
Sbjct: 63 TAP 65
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 288 PPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRR 446
PPRR PS + +SR + +P+ LG+ ++ +S+ H RR
Sbjct: 118 PPRRRPSRFSAPAASSRLSRLARAPSGRAVFSLGLAATSSPSPSVSRGKHRRR 170
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 288 PPRRNPSSMAPVQLTSRPCTMHGSPTQTP 374
PP P S AP+Q +RP + G PT P
Sbjct: 273 PPPPPPPSPAPIQHFARPLHVWGHPTMDP 301
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 407 ATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSG 511
A N P A PPP++AP + P T+ P+ G
Sbjct: 88 AGNPPTPAQAGAPPPSIAPGTGSPPPATTTPPAPG 122
>12_02_1046 + 25662715-25662884,25663163-25663757
Length = 254
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 434 RRLAELRLSHCGKMHPKTRVRSLGRRAMH 348
RRLAEL LS C P+ R+R++ R A+H
Sbjct: 56 RRLAELSLSSC---CPRLRLRAVRRLALH 81
>10_08_0974 + 21969713-21971914
Length = 733
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 362 DPNSVHAS-WDAFFRNATNGAQPGAAYTPPPNLAPY 466
DP ++ AS W + FR QP AA PPP+L+P+
Sbjct: 67 DPVAITASLWVSSFR-----PQPTAAAPPPPSLSPF 97
>01_04_0051 + 15430980-15431591
Length = 203
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 277 AEELHRGGTLPQWLQFSLRRDHVQCMARRPKLRTRV 384
A +L G P W+Q + R H + + RRP L R+
Sbjct: 86 AGDLVDNGGAPAWVQDARRDAHRRALRRRPALLRRI 121
>11_06_0010 + 19235419-19236450
Length = 343
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = -1
Query: 402 RKNASQDACTEFGSASHALYMVST*AELEPLRKGSAAVELFSLLAFTETAAVCGLFRSHD 223
RK Q A SA+ A + AEL+ R+ +A +E E+ A CGL RS++
Sbjct: 169 RKRQCQ-AVVRAASAAAARRLREKEAELDAARRRAAELEERLRQVAAESQAWCGLARSNE 227
Query: 222 A 220
A
Sbjct: 228 A 228
>08_02_1084 - 24232968-24234779
Length = 603
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 389 DAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVP 502
D F N+++ P + PPP+L P + P + +P
Sbjct: 42 DGFLHNSSSSQPPPSQQLPPPSLPPPLPQKQPPSQQLP 79
>08_01_1017 - 10284284-10284447,10285887-10286186,10286340-10286478
Length = 200
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 312 LRKGSAAVELFSLLAFTETAAVCGLFRSHDAN 217
++KG A+ LF LL A C RSH N
Sbjct: 1 MKKGFLALSLFLLLTLASQATWCDAERSHAIN 32
>07_03_1629 - 28246440-28247339
Length = 299
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 410 TNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSS 508
TN AAY PP LAP++ + + PSS
Sbjct: 92 TNFVYTHAAYNYPPFLAPFHAPQYAAAAAAPSS 124
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 291 PRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRRRPI 455
PR+ P + APV + P T S T T T S R+ + A R P+
Sbjct: 105 PRKPPGTTAPVAARNIPATTAASRTATRATTTTTATSVSRRPAAAAAAVASRIPL 159
>01_05_0267 - 20237001-20237802,20238257-20238386,20238679-20238820
Length = 357
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 285 APPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTEL 422
APP S P+ +T+ P TM S + +PY G S+ R L
Sbjct: 172 APPHSPAVSFDPLSVTNVPTTMMQS-SSSPYGAAGGEHSSFRSDTL 216
>01_03_0221 - 13916129-13916504,13917183-13917217
Length = 136
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 455 DWAAACMRRLAELRLSHCGKMHPKTRVRSLGRR 357
DWAAA RR CG+ + R LGRR
Sbjct: 97 DWAAATARRGGAASGGVCGEEKGRCRGEELGRR 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,049,383
Number of Sequences: 37544
Number of extensions: 325646
Number of successful extensions: 1078
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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