Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32292
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ... 93 1e-19
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF106583-1|AAM15569.1| 183|Caenorhabditis elegans Hypothetical ... 28 4.6
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a... 28 4.6
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr... 27 8.0
U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (gr... 27 8.0
L16685-3|AAA28169.3| 321|Caenorhabditis elegans Hypothetical pr... 27 8.0
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein. 27 8.0
>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
protein T22B11.5 protein.
Length = 1029
Score = 93.1 bits (221), Expect = 1e-19
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Frame = +2
Query: 164 MHRARIVFNISKSGQSERFASWLLNKPQTAAVSVNANRLKSSTAA---EPFLNGSSSAYV 334
MHRA ++ ++ + + K +A ++ +R +S AA EPFLNGSSS Y+
Sbjct: 1 MHRASLICRLASPSRINAIRNASSGKSHISASTLVQHRNQSVAAAVKHEPFLNGSSSIYI 60
Query: 335 ETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLA 460
E MY AWL DP+SVH SWDA+FRN GA PG A+ PP A
Sbjct: 61 EQMYEAWLQDPSSVHTSWDAYFRNVEAGAGPGQAFQAPPATA 102
>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
protein D2085.1 protein.
Length = 2198
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 329 YVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPP 451
Y+ + + + DP+S+ A W A F N + G ++ P
Sbjct: 292 YITSQNHGYAVDPDSLPADWKALFTNENDKTNEGIVHSSKP 332
>Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical
protein B0365.6 protein.
Length = 545
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 278 LKSSTAAEPFLNGSSSAYVETMYNAWLAD-PNS-VHASWDAFFRNATNGAQPGAAYTPPP 451
L+ ++A+ + +++ ++ ++ +A+ PN V+ W+A F+ +T+ QP TP P
Sbjct: 371 LQGNSASNQWYTSTTNT-MKVVFRPCIANCPNDGVNYRWEADFKPSTDVTQPPVTVTPNP 429
Query: 452 N 454
N
Sbjct: 430 N 430
>AF106583-1|AAM15569.1| 183|Caenorhabditis elegans Hypothetical
protein F23C8.13 protein.
Length = 183
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 455 DWAAACMRRLAELRLSHCGKMHPKTRVRSLGRRAMHCTWSR 333
D + MRR + RLS C + +TR GR + T SR
Sbjct: 73 DGESVMMRRRRQARLSMCNEQREQTRHVVSGRATLRMTSSR 113
>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
assigned gene nameprotein 168 protein.
Length = 1347
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 323 SAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGA 433
++Y + N+ PNS H+ + F R+A+ GAQP A
Sbjct: 635 TSYAANLQNSMQQSAPNSGHSGYATFDRSASLGAQPQA 672
>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical protein
K04B12.1 protein.
Length = 1764
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 323 NWSH*GRVPPRWSSSAYWHLLKP 255
+WS R P +SSS Y+HL P
Sbjct: 1491 SWSSLDRCSPIYSSSKYYHLTNP 1513
>U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (grd
related) protein12 protein.
Length = 186
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 392 AFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSS 508
AFF + G+ G + TPPP+ P +P+ + P S
Sbjct: 18 AFFNSLFGGSNCGCSCTPPPSTCP--TTCLPIMTCTPPS 54
>L16685-3|AAA28169.3| 321|Caenorhabditis elegans Hypothetical
protein ZC21.3 protein.
Length = 321
Score = 27.1 bits (57), Expect = 8.0
Identities = 21/102 (20%), Positives = 40/102 (39%)
Frame = +2
Query: 188 NISKSGQSERFASWLLNKPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADP 367
+ S +GQ+ + + N P S ++ + + + + S+ Y YN A
Sbjct: 51 SFSSNGQA-MYQTGTTNYPTLYQPSSSSPQYSNGAPSTTYSPTSTYGYSSQNYNPSSASS 109
Query: 368 NSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTS 493
++V+ + + N Q AY +PY VP T+
Sbjct: 110 SNVYRNPSTSYGNTQQSNQNYVAYDTTNQNSPYYYQRVPSTA 151
>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
Length = 1766
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 323 NWSH*GRVPPRWSSSAYWHLLKP 255
+WS R P +SSS Y+HL P
Sbjct: 1493 SWSSLDRCSPIYSSSKYYHLTNP 1515
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,188,374
Number of Sequences: 27780
Number of extensions: 254342
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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