Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32285
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   2.9  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    26   2.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   2.9  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   6.7  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   8.9  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 89  SVKLSDTECWKSSSRSKYWNSHHFEKKTEV 178
           S ++ D    K    +KY+NS HFE K  V
Sbjct: 108 SHRIKDKITTKCKGTTKYFNSRHFEIKNAV 137


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 201 RSNSNLKNTSVFF--SK*CEFQYLDREDD 121
           +S+ N ++T +F+  S   E QYLD EDD
Sbjct: 616 KSDKNTQSTLLFYDPSSTTEAQYLDNEDD 644


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 283 LVAVNVSCHVTLFDRSIVPTL*SNEFLEIK 194
           LVAVN  CH+ ++   +V    S +F E K
Sbjct: 126 LVAVNPYCHLPIYGDDVVRKYQSKQFKETK 155


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 294  CCHCEYPNPYQLLLNYVLSYAEKW 365
            C +C Y N  +L++ +   Y  KW
Sbjct: 1334 CQYCPYKNADELMVGFGYHYNHKW 1357


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 228 GTIDLSNKVT*QLTLTATSKV*CCHCEYPNPYQLLLNYVLS 350
           G+ID+ +       +T      C +CE+    Q LL  V S
Sbjct: 334 GSIDIFDAANNMKKITTVEAANCTYCEFSPDSQFLLTAVTS 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,871,821
Number of Sequences: 5004
Number of extensions: 34951
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)