Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32281
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 248 4e-67
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 129 2e-31
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 117 8e-28
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 91 6e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 68 8e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 67 1e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 60 2e-10
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.21
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.63
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 28 0.83
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 1.5
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 1.9
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 1.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 3.4
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 5.9
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 248 bits (606), Expect = 4e-67
Identities = 111/122 (90%), Positives = 116/122 (95%)
Frame = +1
Query: 106 DEEVAALVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 285
+EE+AALV+DNGSGMCKAGFAGDDA RAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 286 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPFLLTEAPLNPKVNREKMTH 465
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK NREKMT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 466 IM 471
I+
Sbjct: 122 II 123
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 129 bits (312), Expect = 2e-31
Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Frame = +1
Query: 124 LVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 303
+ +DNGSG KAGFAGDD + +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 304 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPFLLTEAPLNPKVNREKM 459
+ PIE GI+ NW DME+IW + + + +L PEEHP LLTE PL N+EK+
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKI 124
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 117 bits (282), Expect = 8e-28
Identities = 55/122 (45%), Positives = 81/122 (66%), Gaps = 2/122 (1%)
Frame = +1
Query: 112 EVAALVVDNGSGMCKAGFAGDDASRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 285
E A +V+DNG+G K G+A D+ R FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 286 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPFLLTEAPLNPKVNREKMTH 465
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P LLTE P+NP NREKM
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 466 IM 471
M
Sbjct: 122 TM 123
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 91.5 bits (217), Expect = 6e-20
Identities = 53/140 (37%), Positives = 72/140 (51%), Gaps = 24/140 (17%)
Frame = +1
Query: 124 LVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVG---------MGQK-------- 252
+++DNG+G K G+AG+DA VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 253 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPF 411
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H F
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 412 LLTEAPLNPKVNREKMTHIM 471
LLTE PLNP NRE IM
Sbjct: 127 LLTEPPLNPPENRENTAEIM 146
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 67.7 bits (158), Expect = 8e-13
Identities = 41/121 (33%), Positives = 61/121 (50%)
Frame = +1
Query: 109 EEVAALVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 288
+EV+A+V+D GS + GF+G+D + V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 289 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPFLLTEAPLNPKVNREKMTHI 468
G + +K I +G V NWD +W + +L+ P EHP L+TE NP NR K
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 469 M 471
M
Sbjct: 121 M 121
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 67.3 bits (157), Expect = 1e-12
Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = +1
Query: 124 LVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 303
LV+DNGS +AG+ G+ + VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 304 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPFLLTEAPLNPKVNREKMTHIM 471
+ P E +++NWD ME++ +TF +L + EHP +TE NP R MT ++
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELL 138
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 59.7 bits (138), Expect = 2e-10
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Frame = +1
Query: 109 EEVAALVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 288
EE+ +LV+D GS + G+AG+++ + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 289 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPFLLTEAPLNPKVNREKM 459
I + +K +GI+ +W+ W +L+V P E+ ++TE NP+ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQI 120
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.21
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 266 PT*ESFCPI-PTITP*WRGLPTIEGNTAREASSPAKPALHIPEPLSTTNAATSSS 105
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.63
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 277 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 188
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.9 bits (59), Expect = 0.83
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = +1
Query: 124 LVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 303
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 304 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPFLLTE 423
++ H G + +W +W N + P ++ LLT+
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQ 101
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 1.5
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -3
Query: 306 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 127
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 370 FYNELRVAPEEHPFLLTE--APLNPKVNREKMTHI 468
+Y L E+HP LLT+ A L P+++ ++ I
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRI 1433
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 310 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPF 411
PI+ G V +W+ ++ W H Y+ L P + F
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTF 145
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 2.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 269 SPT*ESFC--PIPTITP*WRGLPTIEGNTAREASSPAKPAL 153
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 151 TYRSHCLLPTRQLLRRTS*ISEI 83
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 306 FEGQDTSFALCLISYIRVLLSHTDHHA 226
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 136 NGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 288
N +GM ++R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 229 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 315
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 292 ILTLKYPIEHGIVTN 336
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 9.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 331 TNWDDMEKIWHHTFYNELRVAPEEHP 408
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,241
Number of Sequences: 5004
Number of extensions: 44987
Number of successful extensions: 130
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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