Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32280
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...   146   1e-36
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    26   2.9  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    26   2.9  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   3.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.1  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   5.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   5.1  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.7  

>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score =  146 bits (355), Expect = 1e-36
 Identities = 65/84 (77%), Positives = 74/84 (88%)
 Frame = +2

Query: 95  AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 274
           AVIK  DMSE+MQQ+A+  A QA+EKF IEKDIAAFIK+EFDKK++PTWHCIVGRNFGS+
Sbjct: 2   AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSF 61

Query: 275 VTHXTRHFIYFYLGQXAILLFKSG 346
           VTH +RHFIYFYLG  A LLFKSG
Sbjct: 62  VTHESRHFIYFYLGTVAFLLFKSG 85


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 56  KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNP 235
           +QKQ + +   RK   K   M+E+ +    +   + L K N+E       +K+     N 
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN- 585

Query: 236 TWHCIVGRN 262
            +H IV  N
Sbjct: 586 KYHPIVSSN 594


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 207 LMNAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCFC 58
           L N   SF + N   +      A+ C+SSL+       L    L W+C C
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKC 188


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 167 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 54
           ++L L + QH+   L SC ++L +L  H  CL  F++ S
Sbjct: 39  KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 147  STASCCISSLMSAFFMTALRSHIL-SWVCFCFDK*TISHVKILITGDS 7
            S +S  +S++  +    ++ S +L SW+CF      I+ V I+++G S
Sbjct: 3547 SISSAKLSTICRSVLKASVNSALLTSWICFLNSIGAINCVGIVVSGRS 3594


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +2

Query: 59  QKQTQD--KMCDRKAVIKNADMSEEMQQDAVDCATQALEKF 175
           +K+T +  KM   K ++K AD+S  +Q+D +   T+ LEK+
Sbjct: 521 EKKTDEPVKMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 263  FGSYVTHXTRHFIYFYLGQXAILLFKSG*TIXHHFYF--FVSSGRSIIRWIAFADSHAXL 436
            FG+ +T  T H++YF++   A+++        H F F  F    R  +RW++  ++    
Sbjct: 1432 FGT-MTVWTTHYVYFWVTMFALVICPFIYN-PHQFSFVDFFVDYREFLRWLSRGNTKGHA 1489

Query: 437  GLW 445
              W
Sbjct: 1490 HSW 1492


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 169 LERLSCTVNSILLHLFAHVSILYDCF 92
           LE L+  +N  +  +FA++ +  DCF
Sbjct: 565 LEFLNSCINRCISRVFAYLDVCVDCF 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,731
Number of Sequences: 5004
Number of extensions: 32969
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)